test_installation.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Python package

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]

jobs:
  build:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ ubuntu-20.04, ubuntu-22.04 ]
        python-version: ["3.8", "3.9", "3.10"]

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install Poetry
      uses: snok/install-poetry@v1
      with:
        version: 1.4.0
        virtualenvs-create: true
        installer-parallel: false
    - name: Install package
      run: |
          poetry install --with tests --no-interaction
    - name: Lint with flake8
      run: |
        # stop the build if there are Python syntax errors or undefined names
        poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Test conversion to .txt models
      run: |
        poetry run tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/output.txt -f \
          --output-format "name ra_d dec_d i q u v i q u v spi rm emaj_s emin_s pa_d freq0"
        poetry run tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/output.recentred.txt -f --center 85.5deg,49.9deg --rename \
          --output-format "name ra_d dec_d i q u v i q u v spi rm emaj_s emin_s pa_d freq0"
        echo "Checking reference LSM"
        diff $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.reference.txt /tmp/output.txt
        echo "Checking recentred reference LSM"
        diff $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.recentred.reference.txt /tmp/output.recentred.txt
    - name: Test reverse conversion to .lsm.html models
      run: |
        poetry run tigger-convert /tmp/output.txt /tmp/output.lsm.html -f
    - name: Test .gaul conversions
      run: |
        poetry run tigger-convert $GITHUB_WORKSPACE/test/deep4.gaul /tmp/deep4.lsm.html -f 
        poetry run tigger-convert $GITHUB_WORKSPACE/test/deep4.gaul /tmp/deep4.txt -f --output-format "name ra_d dec_d i q u v spi rm emaj_s emin_s pa_d freq0"
        diff $GITHUB_WORKSPACE/test/deep4.reference.txt /tmp/deep4.txt
    - name: Test .AIPSCC conversions
      run: |
        gunzip <$GITHUB_WORKSPACE/test/3C147-L-A-CLEAN.fits.gz >/tmp/3C147-L-A-CLEAN.fits
        poetry run tigger-convert /tmp/3C147-L-A-CLEAN.fits /tmp/3C147-L-A-CLEAN.fits.lsm.html -f
        poetry run tigger-convert /tmp/3C147-L-A-CLEAN.fits.lsm.html /tmp/3C147-L-A-CLEAN.txt -f --output-format "name ra_d dec_d i q u v"
        zdiff $GITHUB_WORKSPACE/test/3C147-L-A-CLEAN.txt.gz /tmp/3C147-L-A-CLEAN.txt
    - name: Testing tigger-restore and tigger-make-brick
      run: |
        cp $GITHUB_WORKSPACE/test/3C147tmp.fits /tmp
        poetry run tigger-make-brick $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/3C147tmp.fits 
        poetry run tigger-restore -f $GITHUB_WORKSPACE/test/3C147tmp.fits $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/restored.fits
    - name: Test tigger-tag
      run: |
        poetry run tigger-tag $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html 'r<0.5d' inner=1 -o /tmp/tmp.lsm.html -f
    - name: Test .lsm to ds9 region file conversion
      run: |
        echo "Checking lsm.html to .reg conversion"
        poetry run tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/3C147-HI6.refmodel.lsm.reg -f