nf-core/metapep: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

v0.9dev - [date]

Initial release of nf-core/metapep, created with the nf-core template.

`Added`

#1 - Download of proteins from NCBI's Entrez databases
#2 - Add peptide generationfrom proteins
#9,#10 - Add protein prediction using Prodigal v2.6.3
#11 - Compute protein weights based on taxonomic abundances or contig depths #4
#20, #26 - Add creation of main db files for new data model (published in results/db_tables)
#19 - Integrate epitope prediction into the pipeline
#20 - New input format allowing handling of multiple conditions
#36 - Add generation of first plot: score distributions for different conditions (and alleles)
#44 - Adjusted process-specific resource requirements
#47 - Add peptides subsampling parameter --sample_n
#60 - Add entities to data model
#60 - Add option for bins input type
#60 - Add plotting of entity-wise binder ratios
#64 - Add process to collect stats (results/db_tables/stats.txt)

`Fixed`

#41 - Allow assembly input without weights
#53 - Add buffering of predictions and chunk-wise merging to avoid sbatch error due to too many input files #52

`Dependencies`

`Deprecated`