diff --git a/tests/data/samplesheets/samplesheet-bad-metadata_1.csv b/tests/data/samplesheets/samplesheet-bad-metadata_1.csv
index f92ce5b..2ea7d09 100644
--- a/tests/data/samplesheets/samplesheet-bad-metadata_1.csv
+++ b/tests/data/samplesheets/samplesheet-bad-metadata_1.csv
@@ -1,7 +1,7 @@
 sample,mlst_alleles,metadata_partition,metadata_1,metadata_2,metadata_3,metadata_4,metadata_5,metadata_6,metadata_7,metadata_8
-S1,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S1.mlst.json,1,"Escherichia coli|","EHEC/STEC","Canada","O157:H7",21,"2024/05/30","beef",true
-S2,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC","The United States","O157:H7",55,"2024/05/21","milk",false
-S3,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC","France","O125",14,"2024/04/30","cheese",true
-S4,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC","France","O125",35,"2024/04/22","cheese",true
-S5,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC","Canada","O126:H27",61,"2012/09/01","milk",false
-S6,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC","Canada","O111:H21",43,"2011/12/25","fruit",false
+S1,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S1.mlst.json,1,"Escherichia coli|","EHEC/STEC","Canada","O157:H7",21,"2024/05/30","beef",true
+S2,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC","The United States","O157:H7",55,"2024/05/21","milk",false
+S3,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC","France","O125",14,"2024/04/30","cheese",true
+S4,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC","France","O125",35,"2024/04/22","cheese",true
+S5,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC","Canada","O126:H27",61,"2012/09/01","milk",false
+S6,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC","Canada","O111:H21",43,"2011/12/25","fruit",false
diff --git a/tests/data/samplesheets/samplesheet-bad-metadata_partition.csv b/tests/data/samplesheets/samplesheet-bad-metadata_partition.csv
index 657161c..d8204c6 100644
--- a/tests/data/samplesheets/samplesheet-bad-metadata_partition.csv
+++ b/tests/data/samplesheets/samplesheet-bad-metadata_partition.csv
@@ -1,7 +1,7 @@
 sample,mlst_alleles,metadata_partition,metadata_1,metadata_2,metadata_3,metadata_4,metadata_5,metadata_6,metadata_7,metadata_8
-S1,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S1.mlst.json,1@,"Escherichia coli","EHEC/STEC","Canada","O157:H7",21,"2024/05/30","beef",true
-S2,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC","The United States","O157:H7",55,"2024/05/21","milk",false
-S3,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC","France","O125",14,"2024/04/30","cheese",true
-S4,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC","France","O125",35,"2024/04/22","cheese",true
-S5,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC","Canada","O126:H27",61,"2012/09/01","milk",false
-S6,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC","Canada","O111:H21",43,"2011/12/25","fruit",false
+S1,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S1.mlst.json,1@,"Escherichia coli","EHEC/STEC","Canada","O157:H7",21,"2024/05/30","beef",true
+S2,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC","The United States","O157:H7",55,"2024/05/21","milk",false
+S3,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC","France","O125",14,"2024/04/30","cheese",true
+S4,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC","France","O125",35,"2024/04/22","cheese",true
+S5,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC","Canada","O126:H27",61,"2012/09/01","milk",false
+S6,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC","Canada","O111:H21",43,"2011/12/25","fruit",false
diff --git a/tests/data/samplesheets/samplesheet-id-mismatch.csv b/tests/data/samplesheets/samplesheet-id-mismatch.csv
index fc9ba9c..c7a7dc1 100644
--- a/tests/data/samplesheets/samplesheet-id-mismatch.csv
+++ b/tests/data/samplesheets/samplesheet-id-mismatch.csv
@@ -1,7 +1,7 @@
 sample,mlst_alleles,metadata_partition,metadata_1,metadata_2,metadata_3,metadata_4,metadata_5,metadata_6,metadata_7,metadata_8
-S1,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S1.mlst.json,1,"Escherichia coli","EHEC/STEC","Canada","O157:H7",21,"2024/05/30","beef",true
-MISMATCH,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC","The United States","O157:H7",55,"2024/05/21","milk",false
-S3,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC","France","O125",14,"2024/04/30","cheese",true
-S4,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC","France","O125",35,"2024/04/22","cheese",true
-S5,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC","Canada","O126:H27",61,"2012/09/01","milk",false
-S6,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC","Canada","O111:H21",43,"2011/12/25","fruit",false
+S1,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S1.mlst.json,1,"Escherichia coli","EHEC/STEC","Canada","O157:H7",21,"2024/05/30","beef",true
+MISMATCH,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC","The United States","O157:H7",55,"2024/05/21","milk",false
+S3,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC","France","O125",14,"2024/04/30","cheese",true
+S4,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC","France","O125",35,"2024/04/22","cheese",true
+S5,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC","Canada","O126:H27",61,"2012/09/01","milk",false
+S6,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC","Canada","O111:H21",43,"2011/12/25","fruit",false
diff --git a/tests/data/samplesheets/samplesheet-little-metadata.csv b/tests/data/samplesheets/samplesheet-little-metadata.csv
index 443d67a..8831ab4 100644
--- a/tests/data/samplesheets/samplesheet-little-metadata.csv
+++ b/tests/data/samplesheets/samplesheet-little-metadata.csv
@@ -1,7 +1,7 @@
 sample,mlst_alleles,metadata_partition,metadata_1,metadata_2,metadata_3,metadata_4,metadata_5,metadata_6,metadata_7,metadata_8
-S1,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S1.mlst.json,1,"Escherichia coli","EHEC/STEC",,,,,,
-S2,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC",,,,,,
-S3,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC",,,,,,
-S4,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC",,,,,,
-S5,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC",,,,,,
-S6,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC",,,,,,
+S1,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S1.mlst.json,1,"Escherichia coli","EHEC/STEC",,,,,,
+S2,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC",,,,,,
+S3,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC",,,,,,
+S4,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC",,,,,,
+S5,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC",,,,,,
+S6,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC",,,,,,
diff --git a/tests/data/samplesheets/samplesheet.csv b/tests/data/samplesheets/samplesheet.csv
index 7b0fc77..7e27187 100644
--- a/tests/data/samplesheets/samplesheet.csv
+++ b/tests/data/samplesheets/samplesheet.csv
@@ -1,7 +1,7 @@
 sample,mlst_alleles,metadata_partition,metadata_1,metadata_2,metadata_3,metadata_4,metadata_5,metadata_6,metadata_7,metadata_8
-S1,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S1.mlst.json,1,"Escherichia coli","EHEC/STEC","Canada","O157:H7",21,"2024/05/30","beef",true
-S2,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC","The United States","O157:H7",55,"2024/05/21","milk",false
-S3,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC","France","O125",14,"2024/04/30","cheese",true
-S4,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC","France","O125",35,"2024/04/22","cheese",true
-S5,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC","Canada","O126:H27",61,"2012/09/01","milk",false
-S6,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC","Canada","O111:H21",43,"2011/12/25","fruit",false
+S1,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S1.mlst.json,1,"Escherichia coli","EHEC/STEC","Canada","O157:H7",21,"2024/05/30","beef",true
+S2,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC","The United States","O157:H7",55,"2024/05/21","milk",false
+S3,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC","France","O125",14,"2024/04/30","cheese",true
+S4,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC","France","O125",35,"2024/04/22","cheese",true
+S5,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC","Canada","O126:H27",61,"2012/09/01","milk",false
+S6,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC","Canada","O111:H21",43,"2011/12/25","fruit",false