From 16883b8e0388b150e1f960284d3c6238c464ee27 Mon Sep 17 00:00:00 2001 From: kylacochrane Date: Thu, 5 Sep 2024 12:50:08 -0400 Subject: [PATCH] update asset/samplesheet.csv file paths --- assets/samplesheet.csv | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/assets/samplesheet.csv b/assets/samplesheet.csv index 7b0fc77..7e27187 100644 --- a/assets/samplesheet.csv +++ b/assets/samplesheet.csv @@ -1,7 +1,7 @@ sample,mlst_alleles,metadata_partition,metadata_1,metadata_2,metadata_3,metadata_4,metadata_5,metadata_6,metadata_7,metadata_8 -S1,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S1.mlst.json,1,"Escherichia coli","EHEC/STEC","Canada","O157:H7",21,"2024/05/30","beef",true -S2,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC","The United States","O157:H7",55,"2024/05/21","milk",false -S3,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC","France","O125",14,"2024/04/30","cheese",true -S4,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC","France","O125",35,"2024/04/22","cheese",true -S5,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC","Canada","O126:H27",61,"2012/09/01","milk",false -S6,https://raw.githubusercontent.com/phac-nml/arboratornf/update/input_assure/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC","Canada","O111:H21",43,"2011/12/25","fruit",false +S1,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S1.mlst.json,1,"Escherichia coli","EHEC/STEC","Canada","O157:H7",21,"2024/05/30","beef",true +S2,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S2.mlst.json,1,"Escherichia coli","EHEC/STEC","The United States","O157:H7",55,"2024/05/21","milk",false +S3,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S3.mlst.json,2,"Escherichia coli","EPEC","France","O125",14,"2024/04/30","cheese",true +S4,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S4.mlst.json,2,"Escherichia coli","EPEC","France","O125",35,"2024/04/22","cheese",true +S5,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S5.mlst.json,3,"Escherichia coli","EAEC","Canada","O126:H27",61,"2012/09/01","milk",false +S6,https://raw.githubusercontent.com/phac-nml/arboratornf/dev/tests/data/profiles/S6.mlst.json,unassociated,"Escherichia coli","EAEC","Canada","O111:H21",43,"2011/12/25","fruit",false