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MainForm.Designer.cs
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MainForm.Designer.cs
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/*
* Created by SharpDevelop.
* User: paulo
* Date: 12/23/2006
* Time: 12:04 PM
*
* To change this template use Tools | Options | Coding | Edit Standard Headers.
*/
using System;
using System.IO;
using System.Data;
using System.Windows.Forms;
using msmsCluster.Properties;
using System.Resources;
using System.Reflection;
using System.Threading;
namespace msmsCluster
{
partial class MainForm : System.Windows.Forms.Form
{
/// <summary>
/// Designer variable used to keep track of non-visual components.
/// </summary>
private System.ComponentModel.IContainer components = null;
//The parser will store the structure of all the files in RAM
msmsParser parser = new msmsParser();
msmsCluster cluster;
sparseMatrix sMatrix = new sparseMatrix();
bool[] acceptableCharges = new bool[100];
System.ComponentModel.ComponentResourceManager myResources = new System.ComponentModel.ComponentResourceManager(typeof(Resources));
/// <summary>
/// Disposes resources used by the form.
/// </summary>
/// <param name="disposing">true if managed resources should be disposed; otherwise, false.</param>
protected override void Dispose(bool disposing)
{
if (disposing)
{
if (components != null)
{
components.Dispose();
}
}
base.Dispose(disposing);
}
/// <summary>
/// This method is required for Windows Forms designer support.
/// Do not change the method contents inside the source code editor. The Forms designer might
/// not be able to load this method if it was changed manually.
/// </summary>
///
private void InitializeFormVariables()
{
this.toolStripStatusLabel2.Text = "Waiting for work....";
this.masterDirectoryTB.Text = "D:\\brims\\BRIMS_DTA\\quickTests";
this.clusterMarginTB.Text = "0.1";
for (int i = 0; i < acceptableCharges.Length; i++)
{
acceptableCharges[i] = false;
}
//Capture the values for the three existing buttons
setValueForacceptableCharges1();
setValueForacceptableCharges2();
setValueForacceptableCharges3();
//The save dialog defaults
this.saveFileDialog1.DefaultExt = ".txt";
this.saveFileDialog1.Filter = "txt files (*.txt)|*.txt|All files (*.*)|*.*";
this.saveFileDialog1.FilterIndex = 1;
this.saveFileDialog1.ShowHelp = false;
this.comboBoxNormalization.SelectedIndex = 0;
this.comboBoxFeatureSelection.SelectedIndex = 0;
}
private void InitializeComponent()
{
System.ComponentModel.ComponentResourceManager resources = new System.ComponentModel.ComponentResourceManager(typeof(MainForm));
this.label1 = new System.Windows.Forms.Label();
this.loadB = new System.Windows.Forms.Button();
this.masterDirectoryTB = new System.Windows.Forms.TextBox();
this.label3 = new System.Windows.Forms.Label();
this.clusterMarginTB = new System.Windows.Forms.TextBox();
this.label4 = new System.Windows.Forms.Label();
this.clusterB = new System.Windows.Forms.Button();
this.bWriteIndex = new System.Windows.Forms.Button();
this.buttonWriteSparseMatrix = new System.Windows.Forms.Button();
this.statusStrip1 = new System.Windows.Forms.StatusStrip();
this.toolStripStatusLabel1 = new System.Windows.Forms.ToolStripStatusLabel();
this.toolStripStatusLabel2 = new System.Windows.Forms.ToolStripStatusLabel();
this.menuStrip1 = new System.Windows.Forms.MenuStrip();
this.fileToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.exitToolStripMenuItem1 = new System.Windows.Forms.ToolStripMenuItem();
this.utilsToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.conversionToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.dTA2MS2ToolStripMenuItem1 = new System.Windows.Forms.ToolStripMenuItem();
this.matrixNormalizationToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.horizontalToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.lnToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.zToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.featureSelectionToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.fSVMToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.golubsIndexToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.tTestToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.sVMRFEToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.helpToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem();
this.aboutToolStripMenuItem1 = new System.Windows.Forms.ToolStripMenuItem();
this.groupBox1 = new System.Windows.Forms.GroupBox();
this.progressTB = new System.Windows.Forms.RichTextBox();
this.buttonSaveLog = new System.Windows.Forms.Button();
this.cBIonCharge1 = new System.Windows.Forms.CheckBox();
this.ionCharge = new System.Windows.Forms.GroupBox();
this.cBIonCharge3 = new System.Windows.Forms.CheckBox();
this.cBIonCharge2 = new System.Windows.Forms.CheckBox();
this.textBoxMIC = new System.Windows.Forms.TextBox();
this.label5 = new System.Windows.Forms.Label();
this.label6 = new System.Windows.Forms.Label();
this.groupBoxClusteringStep1 = new System.Windows.Forms.GroupBox();
this.buttonClearMemory = new System.Windows.Forms.Button();
this.groupBox2 = new System.Windows.Forms.GroupBox();
this.radioButtonMS2 = new System.Windows.Forms.RadioButton();
this.radioButtonDTA = new System.Windows.Forms.RadioButton();
this.ButtonOpenFolderBrowserDialog1 = new System.Windows.Forms.Button();
this.groupBox3 = new System.Windows.Forms.GroupBox();
this.radioButtonPrecursor = new System.Windows.Forms.RadioButton();
this.radioButtonFullMSMS = new System.Windows.Forms.RadioButton();
this.tabControl1 = new System.Windows.Forms.TabControl();
this.tabPage1 = new System.Windows.Forms.TabPage();
this.groupBoxClusteringStep3 = new System.Windows.Forms.GroupBox();
this.pictureBoxExclamationMark2 = new System.Windows.Forms.PictureBox();
this.pictureBoxExclamationMark1 = new System.Windows.Forms.PictureBox();
this.groupBoxClusteringStep2 = new System.Windows.Forms.GroupBox();
this.tabPageNormalization = new System.Windows.Forms.TabPage();
this.groupBox5 = new System.Windows.Forms.GroupBox();
this.buttonStopStep3 = new System.Windows.Forms.Button();
this.comboBoxFeatureSelection = new System.Windows.Forms.ComboBox();
this.panel1 = new System.Windows.Forms.Panel();
this.buttonContinueStep3 = new System.Windows.Forms.Button();
this.buttonStartStep3 = new System.Windows.Forms.Button();
this.groupBox4 = new System.Windows.Forms.GroupBox();
this.buttonApplyStep2 = new System.Windows.Forms.Button();
this.comboBoxNormalization = new System.Windows.Forms.ComboBox();
this.groupBoxPFstep1 = new System.Windows.Forms.GroupBox();
this.textBoxOutputDirectory = new System.Windows.Forms.TextBox();
this.buttonOutputDirectoryStep1 = new System.Windows.Forms.Button();
this.textBoxBrowseSparseMatrix = new System.Windows.Forms.TextBox();
this.textBoxBrowseIndex = new System.Windows.Forms.TextBox();
this.buttonBrowseSparseMatrix = new System.Windows.Forms.Button();
this.buttonBrowseIndex = new System.Windows.Forms.Button();
this.tabPage2 = new System.Windows.Forms.TabPage();
this.richTextBoxResults = new System.Windows.Forms.RichTextBox();
this.tabPage3 = new System.Windows.Forms.TabPage();
this.folderBrowserDialog1 = new System.Windows.Forms.FolderBrowserDialog();
this.saveFileDialog1 = new System.Windows.Forms.SaveFileDialog();
this.openFileDialog1 = new System.Windows.Forms.OpenFileDialog();
this.dataGridViewResults = new System.Windows.Forms.DataGridView();
this.statusStrip1.SuspendLayout();
this.menuStrip1.SuspendLayout();
this.groupBox1.SuspendLayout();
this.ionCharge.SuspendLayout();
this.groupBoxClusteringStep1.SuspendLayout();
this.groupBox2.SuspendLayout();
this.groupBox3.SuspendLayout();
this.tabControl1.SuspendLayout();
this.tabPage1.SuspendLayout();
this.groupBoxClusteringStep3.SuspendLayout();
((System.ComponentModel.ISupportInitialize)(this.pictureBoxExclamationMark2)).BeginInit();
((System.ComponentModel.ISupportInitialize)(this.pictureBoxExclamationMark1)).BeginInit();
this.groupBoxClusteringStep2.SuspendLayout();
this.tabPageNormalization.SuspendLayout();
this.groupBox5.SuspendLayout();
this.groupBox4.SuspendLayout();
this.groupBoxPFstep1.SuspendLayout();
this.tabPage2.SuspendLayout();
((System.ComponentModel.ISupportInitialize)(this.dataGridViewResults)).BeginInit();
this.SuspendLayout();
//
// label1
//
this.label1.Location = new System.Drawing.Point(6, 27);
this.label1.Name = "label1";
this.label1.Size = new System.Drawing.Size(67, 22);
this.label1.TabIndex = 0;
this.label1.Text = "Directory";
//
// loadB
//
this.loadB.Location = new System.Drawing.Point(214, 210);
this.loadB.Name = "loadB";
this.loadB.Size = new System.Drawing.Size(150, 22);
this.loadB.TabIndex = 2;
this.loadB.Text = "Load to Memory";
this.loadB.UseVisualStyleBackColor = true;
this.loadB.Click += new System.EventHandler(this.WorkBClick);
//
// masterDirectoryTB
//
this.masterDirectoryTB.Location = new System.Drawing.Point(79, 27);
this.masterDirectoryTB.MaxLength = 150;
this.masterDirectoryTB.Name = "masterDirectoryTB";
this.masterDirectoryTB.Size = new System.Drawing.Size(162, 22);
this.masterDirectoryTB.TabIndex = 3;
this.masterDirectoryTB.Text = "masterDirectory";
//
// label3
//
this.label3.Location = new System.Drawing.Point(6, 24);
this.label3.Name = "label3";
this.label3.Size = new System.Drawing.Size(100, 22);
this.label3.TabIndex = 4;
this.label3.Text = "Cluster Margin";
//
// clusterMarginTB
//
this.clusterMarginTB.Location = new System.Drawing.Point(108, 21);
this.clusterMarginTB.MaxLength = 5;
this.clusterMarginTB.Name = "clusterMarginTB";
this.clusterMarginTB.Size = new System.Drawing.Size(89, 22);
this.clusterMarginTB.TabIndex = 6;
//
// label4
//
this.label4.BackColor = System.Drawing.SystemColors.MenuBar;
this.label4.Font = new System.Drawing.Font("Tahoma", 10.2F, ((System.Drawing.FontStyle)((System.Drawing.FontStyle.Bold | System.Drawing.FontStyle.Italic))), System.Drawing.GraphicsUnit.Point, ((byte)(0)));
this.label4.Location = new System.Drawing.Point(257, 26);
this.label4.Name = "label4";
this.label4.Size = new System.Drawing.Size(240, 22);
this.label4.TabIndex = 7;
this.label4.Text = "PatternLab for Proteomics";
//
// clusterB
//
this.clusterB.Location = new System.Drawing.Point(214, 21);
this.clusterB.Name = "clusterB";
this.clusterB.Size = new System.Drawing.Size(156, 23);
this.clusterB.TabIndex = 11;
this.clusterB.Text = "Cluster";
this.clusterB.UseVisualStyleBackColor = true;
this.clusterB.Click += new System.EventHandler(this.ClusterBClick);
//
// bWriteIndex
//
this.bWriteIndex.Location = new System.Drawing.Point(44, 21);
this.bWriteIndex.Name = "bWriteIndex";
this.bWriteIndex.Size = new System.Drawing.Size(140, 23);
this.bWriteIndex.TabIndex = 12;
this.bWriteIndex.Text = "Save Index";
this.bWriteIndex.UseVisualStyleBackColor = true;
this.bWriteIndex.Click += new System.EventHandler(this.BSaveClusterClick);
//
// buttonWriteSparseMatrix
//
this.buttonWriteSparseMatrix.Location = new System.Drawing.Point(44, 54);
this.buttonWriteSparseMatrix.Name = "buttonWriteSparseMatrix";
this.buttonWriteSparseMatrix.Size = new System.Drawing.Size(140, 23);
this.buttonWriteSparseMatrix.TabIndex = 13;
this.buttonWriteSparseMatrix.Text = "Save Sparse Matrix";
this.buttonWriteSparseMatrix.UseVisualStyleBackColor = true;
this.buttonWriteSparseMatrix.Click += new System.EventHandler(this.BSparseMatrixClick);
//
// statusStrip1
//
this.statusStrip1.Items.AddRange(new System.Windows.Forms.ToolStripItem[] {
this.toolStripStatusLabel1,
this.toolStripStatusLabel2});
this.statusStrip1.Location = new System.Drawing.Point(0, 509);
this.statusStrip1.Name = "statusStrip1";
this.statusStrip1.Size = new System.Drawing.Size(750, 23);
this.statusStrip1.TabIndex = 14;
this.statusStrip1.Text = "statusStrip1";
//
// toolStripStatusLabel1
//
this.toolStripStatusLabel1.Name = "toolStripStatusLabel1";
this.toolStripStatusLabel1.Size = new System.Drawing.Size(59, 18);
this.toolStripStatusLabel1.Text = "Status: ";
//
// toolStripStatusLabel2
//
this.toolStripStatusLabel2.DisplayStyle = System.Windows.Forms.ToolStripItemDisplayStyle.Text;
this.toolStripStatusLabel2.Name = "toolStripStatusLabel2";
this.toolStripStatusLabel2.Size = new System.Drawing.Size(141, 18);
this.toolStripStatusLabel2.Text = "toolStripStatusLabel2";
//
// menuStrip1
//
this.menuStrip1.Items.AddRange(new System.Windows.Forms.ToolStripItem[] {
this.fileToolStripMenuItem,
this.utilsToolStripMenuItem,
this.helpToolStripMenuItem});
this.menuStrip1.Location = new System.Drawing.Point(0, 0);
this.menuStrip1.Name = "menuStrip1";
this.menuStrip1.RenderMode = System.Windows.Forms.ToolStripRenderMode.Professional;
this.menuStrip1.Size = new System.Drawing.Size(750, 26);
this.menuStrip1.TabIndex = 15;
this.menuStrip1.Text = "menuStrip1";
//
// fileToolStripMenuItem
//
this.fileToolStripMenuItem.DropDownItems.AddRange(new System.Windows.Forms.ToolStripItem[] {
this.exitToolStripMenuItem1});
this.fileToolStripMenuItem.Name = "fileToolStripMenuItem";
this.fileToolStripMenuItem.Size = new System.Drawing.Size(40, 22);
this.fileToolStripMenuItem.Text = "File";
//
// exitToolStripMenuItem1
//
this.exitToolStripMenuItem1.Name = "exitToolStripMenuItem1";
this.exitToolStripMenuItem1.Size = new System.Drawing.Size(99, 22);
this.exitToolStripMenuItem1.Text = "Exit";
this.exitToolStripMenuItem1.Click += new System.EventHandler(this.exitToolStripMenuItem1_Click);
//
// utilsToolStripMenuItem
//
this.utilsToolStripMenuItem.DropDownItems.AddRange(new System.Windows.Forms.ToolStripItem[] {
this.conversionToolStripMenuItem,
this.matrixNormalizationToolStripMenuItem,
this.featureSelectionToolStripMenuItem});
this.utilsToolStripMenuItem.Name = "utilsToolStripMenuItem";
this.utilsToolStripMenuItem.Size = new System.Drawing.Size(46, 22);
this.utilsToolStripMenuItem.Text = "Utils";
//
// conversionToolStripMenuItem
//
this.conversionToolStripMenuItem.DropDownItems.AddRange(new System.Windows.Forms.ToolStripItem[] {
this.dTA2MS2ToolStripMenuItem1});
this.conversionToolStripMenuItem.Name = "conversionToolStripMenuItem";
this.conversionToolStripMenuItem.Size = new System.Drawing.Size(207, 22);
this.conversionToolStripMenuItem.Text = "Conversion";
//
// dTA2MS2ToolStripMenuItem1
//
this.dTA2MS2ToolStripMenuItem1.Name = "dTA2MS2ToolStripMenuItem1";
this.dTA2MS2ToolStripMenuItem1.Size = new System.Drawing.Size(141, 22);
this.dTA2MS2ToolStripMenuItem1.Text = "DTA2MS2";
this.dTA2MS2ToolStripMenuItem1.Click += new System.EventHandler(this.dTA2MS2ToolStripMenuItem1_Click);
//
// matrixNormalizationToolStripMenuItem
//
this.matrixNormalizationToolStripMenuItem.DropDownItems.AddRange(new System.Windows.Forms.ToolStripItem[] {
this.horizontalToolStripMenuItem,
this.lnToolStripMenuItem,
this.zToolStripMenuItem});
this.matrixNormalizationToolStripMenuItem.Name = "matrixNormalizationToolStripMenuItem";
this.matrixNormalizationToolStripMenuItem.Size = new System.Drawing.Size(207, 22);
this.matrixNormalizationToolStripMenuItem.Text = "Matrix Normalization";
//
// horizontalToolStripMenuItem
//
this.horizontalToolStripMenuItem.Name = "horizontalToolStripMenuItem";
this.horizontalToolStripMenuItem.Size = new System.Drawing.Size(139, 22);
this.horizontalToolStripMenuItem.Text = "Horizontal";
//
// lnToolStripMenuItem
//
this.lnToolStripMenuItem.Name = "lnToolStripMenuItem";
this.lnToolStripMenuItem.Size = new System.Drawing.Size(139, 22);
this.lnToolStripMenuItem.Text = "ln";
//
// zToolStripMenuItem
//
this.zToolStripMenuItem.Name = "zToolStripMenuItem";
this.zToolStripMenuItem.Size = new System.Drawing.Size(139, 22);
this.zToolStripMenuItem.Text = "z";
//
// featureSelectionToolStripMenuItem
//
this.featureSelectionToolStripMenuItem.DropDownItems.AddRange(new System.Windows.Forms.ToolStripItem[] {
this.fSVMToolStripMenuItem,
this.golubsIndexToolStripMenuItem,
this.tTestToolStripMenuItem,
this.sVMRFEToolStripMenuItem});
this.featureSelectionToolStripMenuItem.Name = "featureSelectionToolStripMenuItem";
this.featureSelectionToolStripMenuItem.Size = new System.Drawing.Size(207, 22);
this.featureSelectionToolStripMenuItem.Text = "Feature Selection";
//
// fSVMToolStripMenuItem
//
this.fSVMToolStripMenuItem.Name = "fSVMToolStripMenuItem";
this.fSVMToolStripMenuItem.Size = new System.Drawing.Size(162, 22);
this.fSVMToolStripMenuItem.Text = "F-SVM";
//
// golubsIndexToolStripMenuItem
//
this.golubsIndexToolStripMenuItem.Name = "golubsIndexToolStripMenuItem";
this.golubsIndexToolStripMenuItem.Size = new System.Drawing.Size(162, 22);
this.golubsIndexToolStripMenuItem.Text = "Golubs Index";
//
// tTestToolStripMenuItem
//
this.tTestToolStripMenuItem.Name = "tTestToolStripMenuItem";
this.tTestToolStripMenuItem.Size = new System.Drawing.Size(162, 22);
this.tTestToolStripMenuItem.Text = "T-Test";
//
// sVMRFEToolStripMenuItem
//
this.sVMRFEToolStripMenuItem.Name = "sVMRFEToolStripMenuItem";
this.sVMRFEToolStripMenuItem.Size = new System.Drawing.Size(162, 22);
this.sVMRFEToolStripMenuItem.Text = "SVM-RFE";
//
// helpToolStripMenuItem
//
this.helpToolStripMenuItem.DropDownItems.AddRange(new System.Windows.Forms.ToolStripItem[] {
this.aboutToolStripMenuItem1});
this.helpToolStripMenuItem.Name = "helpToolStripMenuItem";
this.helpToolStripMenuItem.Size = new System.Drawing.Size(48, 22);
this.helpToolStripMenuItem.Text = "Help";
//
// aboutToolStripMenuItem1
//
this.aboutToolStripMenuItem1.Name = "aboutToolStripMenuItem1";
this.aboutToolStripMenuItem1.Size = new System.Drawing.Size(114, 22);
this.aboutToolStripMenuItem1.Text = "About";
this.aboutToolStripMenuItem1.Click += new System.EventHandler(this.AboutToolStripMenuItem1Click);
//
// groupBox1
//
this.groupBox1.Controls.Add(this.progressTB);
this.groupBox1.Controls.Add(this.buttonSaveLog);
this.groupBox1.Location = new System.Drawing.Point(441, 56);
this.groupBox1.Name = "groupBox1";
this.groupBox1.Size = new System.Drawing.Size(297, 443);
this.groupBox1.TabIndex = 16;
this.groupBox1.TabStop = false;
this.groupBox1.Text = "Log";
//
// progressTB
//
this.progressTB.Location = new System.Drawing.Point(6, 21);
this.progressTB.Name = "progressTB";
this.progressTB.ScrollBars = System.Windows.Forms.RichTextBoxScrollBars.Vertical;
this.progressTB.Size = new System.Drawing.Size(285, 386);
this.progressTB.TabIndex = 13;
this.progressTB.Text = "";
this.progressTB.TextChanged += new System.EventHandler(this.ProgressTBTextChanged);
//
// buttonSaveLog
//
this.buttonSaveLog.Location = new System.Drawing.Point(6, 413);
this.buttonSaveLog.Name = "buttonSaveLog";
this.buttonSaveLog.Size = new System.Drawing.Size(285, 24);
this.buttonSaveLog.TabIndex = 11;
this.buttonSaveLog.Text = "save log";
this.buttonSaveLog.UseVisualStyleBackColor = true;
this.buttonSaveLog.Click += new System.EventHandler(this.ButtonSaveLogClick);
//
// cBIonCharge1
//
this.cBIonCharge1.Checked = true;
this.cBIonCharge1.CheckState = System.Windows.Forms.CheckState.Checked;
this.cBIonCharge1.Location = new System.Drawing.Point(11, 21);
this.cBIonCharge1.Name = "cBIonCharge1";
this.cBIonCharge1.Size = new System.Drawing.Size(47, 24);
this.cBIonCharge1.TabIndex = 17;
this.cBIonCharge1.Text = "+1";
this.cBIonCharge1.UseVisualStyleBackColor = true;
this.cBIonCharge1.CheckedChanged += new System.EventHandler(this.CBIonCharge1CheckedChanged);
//
// ionCharge
//
this.ionCharge.Controls.Add(this.cBIonCharge3);
this.ionCharge.Controls.Add(this.cBIonCharge2);
this.ionCharge.Controls.Add(this.cBIonCharge1);
this.ionCharge.Location = new System.Drawing.Point(275, 58);
this.ionCharge.Name = "ionCharge";
this.ionCharge.Size = new System.Drawing.Size(89, 112);
this.ionCharge.TabIndex = 18;
this.ionCharge.TabStop = false;
this.ionCharge.Text = "ion charge";
//
// cBIonCharge3
//
this.cBIonCharge3.Location = new System.Drawing.Point(11, 78);
this.cBIonCharge3.Name = "cBIonCharge3";
this.cBIonCharge3.Size = new System.Drawing.Size(49, 24);
this.cBIonCharge3.TabIndex = 19;
this.cBIonCharge3.Text = "+3";
this.cBIonCharge3.UseVisualStyleBackColor = true;
this.cBIonCharge3.CheckedChanged += new System.EventHandler(this.CBIonCharge3CheckedChanged);
//
// cBIonCharge2
//
this.cBIonCharge2.Checked = true;
this.cBIonCharge2.CheckState = System.Windows.Forms.CheckState.Checked;
this.cBIonCharge2.Location = new System.Drawing.Point(11, 48);
this.cBIonCharge2.Name = "cBIonCharge2";
this.cBIonCharge2.Size = new System.Drawing.Size(47, 24);
this.cBIonCharge2.TabIndex = 18;
this.cBIonCharge2.Text = "+2";
this.cBIonCharge2.UseVisualStyleBackColor = true;
this.cBIonCharge2.CheckedChanged += new System.EventHandler(this.CBIonCharge2CheckedChanged);
//
// textBoxMIC
//
this.textBoxMIC.Enabled = false;
this.textBoxMIC.Location = new System.Drawing.Point(29, 72);
this.textBoxMIC.Name = "textBoxMIC";
this.textBoxMIC.Size = new System.Drawing.Size(49, 22);
this.textBoxMIC.TabIndex = 22;
this.textBoxMIC.Text = "0.35";
//
// label5
//
this.label5.Enabled = false;
this.label5.Location = new System.Drawing.Point(29, 48);
this.label5.Name = "label5";
this.label5.Size = new System.Drawing.Size(210, 23);
this.label5.TabIndex = 23;
this.label5.Text = "disconsider ions with less than";
//
// label6
//
this.label6.Enabled = false;
this.label6.Location = new System.Drawing.Point(87, 71);
this.label6.Name = "label6";
this.label6.Size = new System.Drawing.Size(86, 23);
this.label6.TabIndex = 24;
this.label6.Text = "of the MIC";
//
// groupBoxClusteringStep1
//
this.groupBoxClusteringStep1.Controls.Add(this.buttonClearMemory);
this.groupBoxClusteringStep1.Controls.Add(this.groupBox2);
this.groupBoxClusteringStep1.Controls.Add(this.ButtonOpenFolderBrowserDialog1);
this.groupBoxClusteringStep1.Controls.Add(this.groupBox3);
this.groupBoxClusteringStep1.Controls.Add(this.ionCharge);
this.groupBoxClusteringStep1.Controls.Add(this.loadB);
this.groupBoxClusteringStep1.Controls.Add(this.label1);
this.groupBoxClusteringStep1.Controls.Add(this.masterDirectoryTB);
this.groupBoxClusteringStep1.Location = new System.Drawing.Point(15, 21);
this.groupBoxClusteringStep1.Name = "groupBoxClusteringStep1";
this.groupBoxClusteringStep1.Size = new System.Drawing.Size(376, 238);
this.groupBoxClusteringStep1.TabIndex = 25;
this.groupBoxClusteringStep1.TabStop = false;
this.groupBoxClusteringStep1.Text = "Step 1: Load MS/MS Experiments";
//
// buttonClearMemory
//
this.buttonClearMemory.Location = new System.Drawing.Point(214, 181);
this.buttonClearMemory.Name = "buttonClearMemory";
this.buttonClearMemory.Size = new System.Drawing.Size(150, 23);
this.buttonClearMemory.TabIndex = 31;
this.buttonClearMemory.Text = "Clear Memory";
this.buttonClearMemory.UseVisualStyleBackColor = true;
this.buttonClearMemory.Click += new System.EventHandler(this.ButtonClearMemoryClick);
//
// groupBox2
//
this.groupBox2.Controls.Add(this.radioButtonMS2);
this.groupBox2.Controls.Add(this.radioButtonDTA);
this.groupBox2.Location = new System.Drawing.Point(6, 179);
this.groupBox2.Name = "groupBox2";
this.groupBox2.Size = new System.Drawing.Size(191, 53);
this.groupBox2.TabIndex = 30;
this.groupBox2.TabStop = false;
this.groupBox2.Text = "File Format";
//
// radioButtonMS2
//
this.radioButtonMS2.Checked = true;
this.radioButtonMS2.Location = new System.Drawing.Point(102, 19);
this.radioButtonMS2.Name = "radioButtonMS2";
this.radioButtonMS2.Size = new System.Drawing.Size(71, 24);
this.radioButtonMS2.TabIndex = 29;
this.radioButtonMS2.TabStop = true;
this.radioButtonMS2.Text = "*.ms2";
this.radioButtonMS2.UseVisualStyleBackColor = true;
//
// radioButtonDTA
//
this.radioButtonDTA.Location = new System.Drawing.Point(25, 19);
this.radioButtonDTA.Name = "radioButtonDTA";
this.radioButtonDTA.Size = new System.Drawing.Size(79, 24);
this.radioButtonDTA.TabIndex = 27;
this.radioButtonDTA.Text = "*.dta";
this.radioButtonDTA.UseVisualStyleBackColor = true;
//
// ButtonOpenFolderBrowserDialog1
//
this.ButtonOpenFolderBrowserDialog1.Location = new System.Drawing.Point(275, 27);
this.ButtonOpenFolderBrowserDialog1.Name = "ButtonOpenFolderBrowserDialog1";
this.ButtonOpenFolderBrowserDialog1.Size = new System.Drawing.Size(95, 23);
this.ButtonOpenFolderBrowserDialog1.TabIndex = 26;
this.ButtonOpenFolderBrowserDialog1.Text = "Browse";
this.ButtonOpenFolderBrowserDialog1.UseVisualStyleBackColor = true;
this.ButtonOpenFolderBrowserDialog1.Click += new System.EventHandler(this.ButtonOpenFolderBrowserDialog1Click);
//
// groupBox3
//
this.groupBox3.Controls.Add(this.radioButtonPrecursor);
this.groupBox3.Controls.Add(this.radioButtonFullMSMS);
this.groupBox3.Controls.Add(this.label6);
this.groupBox3.Controls.Add(this.label5);
this.groupBox3.Controls.Add(this.textBoxMIC);
this.groupBox3.Location = new System.Drawing.Point(6, 58);
this.groupBox3.Name = "groupBox3";
this.groupBox3.Size = new System.Drawing.Size(263, 115);
this.groupBox3.TabIndex = 25;
this.groupBox3.TabStop = false;
this.groupBox3.Text = "MS/MS Extraction";
//
// radioButtonPrecursor
//
this.radioButtonPrecursor.Checked = true;
this.radioButtonPrecursor.Location = new System.Drawing.Point(115, 22);
this.radioButtonPrecursor.Name = "radioButtonPrecursor";
this.radioButtonPrecursor.Size = new System.Drawing.Size(104, 24);
this.radioButtonPrecursor.TabIndex = 26;
this.radioButtonPrecursor.TabStop = true;
this.radioButtonPrecursor.Text = "Precursor";
this.radioButtonPrecursor.UseVisualStyleBackColor = true;
this.radioButtonPrecursor.CheckedChanged += new System.EventHandler(this.RadioButtonPrecursorCheckedChanged);
//
// radioButtonFullMSMS
//
this.radioButtonFullMSMS.Location = new System.Drawing.Point(7, 22);
this.radioButtonFullMSMS.Name = "radioButtonFullMSMS";
this.radioButtonFullMSMS.Size = new System.Drawing.Size(104, 24);
this.radioButtonFullMSMS.TabIndex = 25;
this.radioButtonFullMSMS.Text = "Full MS/MS";
this.radioButtonFullMSMS.UseVisualStyleBackColor = true;
this.radioButtonFullMSMS.CheckedChanged += new System.EventHandler(this.RadioButtonFullMSMSCheckedChanged);
//
// tabControl1
//
this.tabControl1.Controls.Add(this.tabPage1);
this.tabControl1.Controls.Add(this.tabPageNormalization);
this.tabControl1.Controls.Add(this.tabPage2);
this.tabControl1.Controls.Add(this.tabPage3);
this.tabControl1.Location = new System.Drawing.Point(18, 56);
this.tabControl1.Name = "tabControl1";
this.tabControl1.SelectedIndex = 0;
this.tabControl1.Size = new System.Drawing.Size(417, 443);
this.tabControl1.TabIndex = 0;
//
// tabPage1
//
this.tabPage1.Controls.Add(this.groupBoxClusteringStep3);
this.tabPage1.Controls.Add(this.groupBoxClusteringStep2);
this.tabPage1.Controls.Add(this.groupBoxClusteringStep1);
this.tabPage1.Location = new System.Drawing.Point(4, 25);
this.tabPage1.Name = "tabPage1";
this.tabPage1.Padding = new System.Windows.Forms.Padding(3);
this.tabPage1.Size = new System.Drawing.Size(409, 414);
this.tabPage1.TabIndex = 0;
this.tabPage1.Text = "MS/MS";
this.tabPage1.UseVisualStyleBackColor = true;
//
// groupBoxClusteringStep3
//
this.groupBoxClusteringStep3.Controls.Add(this.pictureBoxExclamationMark2);
this.groupBoxClusteringStep3.Controls.Add(this.pictureBoxExclamationMark1);
this.groupBoxClusteringStep3.Controls.Add(this.bWriteIndex);
this.groupBoxClusteringStep3.Controls.Add(this.buttonWriteSparseMatrix);
this.groupBoxClusteringStep3.Enabled = false;
this.groupBoxClusteringStep3.Location = new System.Drawing.Point(15, 325);
this.groupBoxClusteringStep3.Name = "groupBoxClusteringStep3";
this.groupBoxClusteringStep3.Size = new System.Drawing.Size(197, 83);
this.groupBoxClusteringStep3.TabIndex = 27;
this.groupBoxClusteringStep3.TabStop = false;
this.groupBoxClusteringStep3.Text = "Step 3: Produce output";
//
// pictureBoxExclamationMark2
//
this.pictureBoxExclamationMark2.Image = ((System.Drawing.Image)(resources.GetObject("pictureBoxExclamationMark2.Image")));
this.pictureBoxExclamationMark2.Location = new System.Drawing.Point(9, 52);
this.pictureBoxExclamationMark2.Name = "pictureBoxExclamationMark2";
this.pictureBoxExclamationMark2.Size = new System.Drawing.Size(25, 25);
this.pictureBoxExclamationMark2.SizeMode = System.Windows.Forms.PictureBoxSizeMode.StretchImage;
this.pictureBoxExclamationMark2.TabIndex = 29;
this.pictureBoxExclamationMark2.TabStop = false;
//
// pictureBoxExclamationMark1
//
this.pictureBoxExclamationMark1.Image = ((System.Drawing.Image)(resources.GetObject("pictureBoxExclamationMark1.Image")));
this.pictureBoxExclamationMark1.Location = new System.Drawing.Point(9, 19);
this.pictureBoxExclamationMark1.Name = "pictureBoxExclamationMark1";
this.pictureBoxExclamationMark1.Size = new System.Drawing.Size(25, 25);
this.pictureBoxExclamationMark1.SizeMode = System.Windows.Forms.PictureBoxSizeMode.StretchImage;
this.pictureBoxExclamationMark1.TabIndex = 28;
this.pictureBoxExclamationMark1.TabStop = false;
//
// groupBoxClusteringStep2
//
this.groupBoxClusteringStep2.Controls.Add(this.clusterB);
this.groupBoxClusteringStep2.Controls.Add(this.label3);
this.groupBoxClusteringStep2.Controls.Add(this.clusterMarginTB);
this.groupBoxClusteringStep2.Enabled = false;
this.groupBoxClusteringStep2.Location = new System.Drawing.Point(15, 265);
this.groupBoxClusteringStep2.Name = "groupBoxClusteringStep2";
this.groupBoxClusteringStep2.Size = new System.Drawing.Size(376, 54);
this.groupBoxClusteringStep2.TabIndex = 26;
this.groupBoxClusteringStep2.TabStop = false;
this.groupBoxClusteringStep2.Text = "Step 2: Clustering";
//
// tabPageNormalization
//
this.tabPageNormalization.Controls.Add(this.groupBox5);
this.tabPageNormalization.Controls.Add(this.groupBox4);
this.tabPageNormalization.Controls.Add(this.groupBoxPFstep1);
this.tabPageNormalization.Location = new System.Drawing.Point(4, 25);
this.tabPageNormalization.Name = "tabPageNormalization";
this.tabPageNormalization.Padding = new System.Windows.Forms.Padding(3);
this.tabPageNormalization.Size = new System.Drawing.Size(409, 414);
this.tabPageNormalization.TabIndex = 1;
this.tabPageNormalization.Text = "Pattern Finder";
this.tabPageNormalization.UseVisualStyleBackColor = true;
//
// groupBox5
//
this.groupBox5.Controls.Add(this.buttonStopStep3);
this.groupBox5.Controls.Add(this.comboBoxFeatureSelection);
this.groupBox5.Controls.Add(this.panel1);
this.groupBox5.Controls.Add(this.buttonContinueStep3);
this.groupBox5.Controls.Add(this.buttonStartStep3);
this.groupBox5.Location = new System.Drawing.Point(15, 210);
this.groupBox5.Name = "groupBox5";
this.groupBox5.Size = new System.Drawing.Size(373, 198);
this.groupBox5.TabIndex = 12;
this.groupBox5.TabStop = false;
this.groupBox5.Text = "Step 3: Feature Selection";
//
// buttonStopStep3
//
this.buttonStopStep3.Enabled = false;
this.buttonStopStep3.Location = new System.Drawing.Point(138, 159);
this.buttonStopStep3.Name = "buttonStopStep3";
this.buttonStopStep3.Size = new System.Drawing.Size(119, 23);
this.buttonStopStep3.TabIndex = 11;
this.buttonStopStep3.Text = "Stop";
this.buttonStopStep3.UseVisualStyleBackColor = true;
//
// comboBoxFeatureSelection
//
this.comboBoxFeatureSelection.FormattingEnabled = true;
this.comboBoxFeatureSelection.Items.AddRange(new object[] {
"Feature Selection",
"F-SVM",
"Golubs Index",
"nSVM",
"SVM-RFE",
"T-Test"});
this.comboBoxFeatureSelection.Location = new System.Drawing.Point(11, 21);
this.comboBoxFeatureSelection.Name = "comboBoxFeatureSelection";
this.comboBoxFeatureSelection.Size = new System.Drawing.Size(359, 24);
this.comboBoxFeatureSelection.TabIndex = 8;
//
// panel1
//
this.panel1.BackColor = System.Drawing.Color.Transparent;
this.panel1.BorderStyle = System.Windows.Forms.BorderStyle.Fixed3D;
this.panel1.Location = new System.Drawing.Point(11, 51);
this.panel1.Name = "panel1";
this.panel1.Size = new System.Drawing.Size(359, 102);
this.panel1.TabIndex = 0;
this.panel1.Paint += new System.Windows.Forms.PaintEventHandler(this.panel1_Paint);
//
// buttonContinueStep3
//
this.buttonContinueStep3.Location = new System.Drawing.Point(263, 159);
this.buttonContinueStep3.Name = "buttonContinueStep3";
this.buttonContinueStep3.Size = new System.Drawing.Size(107, 23);
this.buttonContinueStep3.TabIndex = 10;
this.buttonContinueStep3.Text = "Continue";
this.buttonContinueStep3.UseVisualStyleBackColor = true;
//
// buttonStartStep3
//
this.buttonStartStep3.Location = new System.Drawing.Point(11, 159);
this.buttonStartStep3.Name = "buttonStartStep3";
this.buttonStartStep3.Size = new System.Drawing.Size(121, 23);
this.buttonStartStep3.TabIndex = 6;
this.buttonStartStep3.Text = "Start";
this.buttonStartStep3.UseVisualStyleBackColor = true;
this.buttonStartStep3.Click += new System.EventHandler(this.buttonStartStep3_Click);
//
// groupBox4
//
this.groupBox4.Controls.Add(this.buttonApplyStep2);
this.groupBox4.Controls.Add(this.comboBoxNormalization);
this.groupBox4.Location = new System.Drawing.Point(15, 139);
this.groupBox4.Name = "groupBox4";
this.groupBox4.Size = new System.Drawing.Size(373, 65);
this.groupBox4.TabIndex = 1;
this.groupBox4.TabStop = false;
this.groupBox4.Text = "Step 2: Normalization and Feature Selection";
//
// buttonApplyStep2
//
this.buttonApplyStep2.Location = new System.Drawing.Point(207, 29);
this.buttonApplyStep2.Name = "buttonApplyStep2";
this.buttonApplyStep2.Size = new System.Drawing.Size(159, 23);
this.buttonApplyStep2.TabIndex = 11;
this.buttonApplyStep2.Text = "Apply";
this.buttonApplyStep2.UseVisualStyleBackColor = true;
//
// comboBoxNormalization
//
this.comboBoxNormalization.FormattingEnabled = true;
this.comboBoxNormalization.Items.AddRange(new object[] {
"Normalization",
"Z (Recomended)",
"Horizontal",
"ln"});
this.comboBoxNormalization.Location = new System.Drawing.Point(7, 29);
this.comboBoxNormalization.Name = "comboBoxNormalization";
this.comboBoxNormalization.Size = new System.Drawing.Size(194, 24);
this.comboBoxNormalization.TabIndex = 5;
//
// groupBoxPFstep1
//
this.groupBoxPFstep1.Controls.Add(this.textBoxOutputDirectory);
this.groupBoxPFstep1.Controls.Add(this.buttonOutputDirectoryStep1);
this.groupBoxPFstep1.Controls.Add(this.textBoxBrowseSparseMatrix);
this.groupBoxPFstep1.Controls.Add(this.textBoxBrowseIndex);
this.groupBoxPFstep1.Controls.Add(this.buttonBrowseSparseMatrix);
this.groupBoxPFstep1.Controls.Add(this.buttonBrowseIndex);
this.groupBoxPFstep1.Location = new System.Drawing.Point(15, 21);
this.groupBoxPFstep1.Name = "groupBoxPFstep1";
this.groupBoxPFstep1.Size = new System.Drawing.Size(373, 112);
this.groupBoxPFstep1.TabIndex = 0;
this.groupBoxPFstep1.TabStop = false;
this.groupBoxPFstep1.Text = "Step 1: Prepare the input";
//
// textBoxOutputDirectory
//
this.textBoxOutputDirectory.Location = new System.Drawing.Point(11, 77);
this.textBoxOutputDirectory.MaxLength = 1000;
this.textBoxOutputDirectory.Name = "textBoxOutputDirectory";
this.textBoxOutputDirectory.Size = new System.Drawing.Size(190, 22);
this.textBoxOutputDirectory.TabIndex = 7;
//
// buttonOutputDirectoryStep1
//
this.buttonOutputDirectoryStep1.Location = new System.Drawing.Point(207, 77);
this.buttonOutputDirectoryStep1.Name = "buttonOutputDirectoryStep1";
this.buttonOutputDirectoryStep1.Size = new System.Drawing.Size(160, 23);
this.buttonOutputDirectoryStep1.TabIndex = 6;
this.buttonOutputDirectoryStep1.Text = "Output Directory";
this.buttonOutputDirectoryStep1.UseVisualStyleBackColor = true;
//
// textBoxBrowseSparseMatrix
//
this.textBoxBrowseSparseMatrix.Location = new System.Drawing.Point(7, 49);
this.textBoxBrowseSparseMatrix.MaxLength = 1000;
this.textBoxBrowseSparseMatrix.Name = "textBoxBrowseSparseMatrix";
this.textBoxBrowseSparseMatrix.Size = new System.Drawing.Size(194, 22);
this.textBoxBrowseSparseMatrix.TabIndex = 4;
//
// textBoxBrowseIndex
//
this.textBoxBrowseIndex.Location = new System.Drawing.Point(7, 21);
this.textBoxBrowseIndex.MaxLength = 1000;
this.textBoxBrowseIndex.Name = "textBoxBrowseIndex";
this.textBoxBrowseIndex.Size = new System.Drawing.Size(194, 22);
this.textBoxBrowseIndex.TabIndex = 3;
this.textBoxBrowseIndex.TextChanged += new System.EventHandler(this.textBox1_TextChanged);
//
// buttonBrowseSparseMatrix
//
this.buttonBrowseSparseMatrix.Location = new System.Drawing.Point(207, 48);
this.buttonBrowseSparseMatrix.Name = "buttonBrowseSparseMatrix";
this.buttonBrowseSparseMatrix.Size = new System.Drawing.Size(160, 23);
this.buttonBrowseSparseMatrix.TabIndex = 1;
this.buttonBrowseSparseMatrix.Text = "Browse Sparse Matrix";
this.buttonBrowseSparseMatrix.UseVisualStyleBackColor = true;
this.buttonBrowseSparseMatrix.Click += new System.EventHandler(this.buttonBrowseSparseMatrix_Click);
//
// buttonBrowseIndex
//
this.buttonBrowseIndex.Location = new System.Drawing.Point(207, 21);
this.buttonBrowseIndex.Name = "buttonBrowseIndex";
this.buttonBrowseIndex.Size = new System.Drawing.Size(160, 23);
this.buttonBrowseIndex.TabIndex = 0;
this.buttonBrowseIndex.Text = "Browse Index";
this.buttonBrowseIndex.UseVisualStyleBackColor = true;
this.buttonBrowseIndex.Click += new System.EventHandler(this.buttonLoadIndex_Click);
//
// tabPage2
//
this.tabPage2.Controls.Add(this.dataGridViewResults);
this.tabPage2.Controls.Add(this.richTextBoxResults);
this.tabPage2.Location = new System.Drawing.Point(4, 25);
this.tabPage2.Name = "tabPage2";
this.tabPage2.Size = new System.Drawing.Size(409, 414);
this.tabPage2.TabIndex = 3;
this.tabPage2.Text = "Result Analizer";
this.tabPage2.UseVisualStyleBackColor = true;
//
// richTextBoxResults
//
this.richTextBoxResults.Location = new System.Drawing.Point(18, 32);
this.richTextBoxResults.Name = "richTextBoxResults";
this.richTextBoxResults.Size = new System.Drawing.Size(370, 154);
this.richTextBoxResults.TabIndex = 0;
this.richTextBoxResults.Text = "";
//
// tabPage3
//
this.tabPage3.Location = new System.Drawing.Point(4, 25);
this.tabPage3.Name = "tabPage3";
this.tabPage3.Padding = new System.Windows.Forms.Padding(3);
this.tabPage3.Size = new System.Drawing.Size(409, 414);
this.tabPage3.TabIndex = 2;
this.tabPage3.Text = "Maestro";
this.tabPage3.UseVisualStyleBackColor = true;
//
// folderBrowserDialog1
//
this.folderBrowserDialog1.ShowNewFolderButton = false;
//
// saveFileDialog1
//
this.saveFileDialog1.RestoreDirectory = true;
this.saveFileDialog1.ShowHelp = true;
//
// dataGridViewResults
//
this.dataGridViewResults.ColumnHeadersHeightSizeMode = System.Windows.Forms.DataGridViewColumnHeadersHeightSizeMode.AutoSize;
this.dataGridViewResults.Location = new System.Drawing.Point(18, 211);
this.dataGridViewResults.Name = "dataGridViewResults";
this.dataGridViewResults.RowTemplate.Height = 24;
this.dataGridViewResults.Size = new System.Drawing.Size(370, 150);
this.dataGridViewResults.TabIndex = 1;
//
// MainForm
//
this.AutoScaleDimensions = new System.Drawing.SizeF(8F, 16F);
this.AutoScaleMode = System.Windows.Forms.AutoScaleMode.Font;
this.ClientSize = new System.Drawing.Size(750, 532);
this.Controls.Add(this.groupBox1);
this.Controls.Add(this.label4);
this.Controls.Add(this.statusStrip1);
this.Controls.Add(this.menuStrip1);
this.Controls.Add(this.tabControl1);
this.DoubleBuffered = true;
this.Icon = ((System.Drawing.Icon)(resources.GetObject("$this.Icon")));
this.MainMenuStrip = this.menuStrip1;
this.Name = "MainForm";
this.Text = "PatternLab";
this.statusStrip1.ResumeLayout(false);
this.statusStrip1.PerformLayout();
this.menuStrip1.ResumeLayout(false);
this.menuStrip1.PerformLayout();
this.groupBox1.ResumeLayout(false);
this.ionCharge.ResumeLayout(false);
this.groupBoxClusteringStep1.ResumeLayout(false);
this.groupBoxClusteringStep1.PerformLayout();
this.groupBox2.ResumeLayout(false);
this.groupBox3.ResumeLayout(false);
this.groupBox3.PerformLayout();
this.tabControl1.ResumeLayout(false);
this.tabPage1.ResumeLayout(false);
this.groupBoxClusteringStep3.ResumeLayout(false);
((System.ComponentModel.ISupportInitialize)(this.pictureBoxExclamationMark2)).EndInit();
((System.ComponentModel.ISupportInitialize)(this.pictureBoxExclamationMark1)).EndInit();
this.groupBoxClusteringStep2.ResumeLayout(false);
this.groupBoxClusteringStep2.PerformLayout();
this.tabPageNormalization.ResumeLayout(false);
this.groupBox5.ResumeLayout(false);
this.groupBox4.ResumeLayout(false);
this.groupBoxPFstep1.ResumeLayout(false);
this.groupBoxPFstep1.PerformLayout();
this.tabPage2.ResumeLayout(false);
((System.ComponentModel.ISupportInitialize)(this.dataGridViewResults)).EndInit();
this.ResumeLayout(false);
this.PerformLayout();
}
private System.Windows.Forms.RichTextBox richTextBoxResults;
private System.Windows.Forms.PictureBox pictureBoxExclamationMark2;
private System.Windows.Forms.PictureBox pictureBoxExclamationMark1;
private System.Windows.Forms.SaveFileDialog saveFileDialog1;
private System.Windows.Forms.ToolStripMenuItem helpToolStripMenuItem;
private System.Windows.Forms.ToolStripMenuItem aboutToolStripMenuItem1;
private System.Windows.Forms.ToolStripMenuItem utilsToolStripMenuItem;
private System.Windows.Forms.Button buttonClearMemory;
private System.Windows.Forms.Button buttonSaveLog;
private System.Windows.Forms.GroupBox groupBox2;
private System.Windows.Forms.RadioButton radioButtonDTA;
private System.Windows.Forms.RadioButton radioButtonMS2;
private System.Windows.Forms.RadioButton radioButtonFullMSMS;
private System.Windows.Forms.RadioButton radioButtonPrecursor;
private System.Windows.Forms.Button buttonWriteSparseMatrix;
private System.Windows.Forms.CheckBox cBIonCharge1;
private System.Windows.Forms.CheckBox cBIonCharge3;
private System.Windows.Forms.CheckBox cBIonCharge2;
private System.Windows.Forms.TextBox textBoxMIC;
private System.Windows.Forms.GroupBox groupBoxClusteringStep1;
private System.Windows.Forms.GroupBox groupBoxClusteringStep2;
private System.Windows.Forms.Button ButtonOpenFolderBrowserDialog1;
private System.Windows.Forms.GroupBox groupBoxClusteringStep3;