Repositories list

• infrastructure-playbook

  Public
  Ansible playbook for managing UseGalaxy.eu infrastructure.

  ansible

  Jinja

  •

  MIT License

  •95•16•18•33•Updated Nov 12, 2024Nov 12, 2024

• usegalaxy-eu.github.io

  Public
  Deployed website (source is in https://github.com/usegalaxy-eu/website )

  HTML

  •

  MIT License

  •3•1•0•2•Updated Nov 12, 2024Nov 12, 2024

• usegalaxy-eu-tools

  Public
  List of tools included in https://usegalaxy.eu

  toolsgalaxyproject

  Python

  •

  MIT License

  •127•26•30•5•Updated Nov 11, 2024Nov 11, 2024

• website

  Public
  UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)

  TeX

  •

  MIT License

  •115•19•31•13•Updated Nov 11, 2024Nov 11, 2024

• galaxy-social

  Public
  Repository for democratising of Galaxy's social media activity - encourage collaboration, editing, peer-review of toots 🐘 and more

  Python

  •

  Creative Commons Zero v1.0 Universal

  •7•6•15•4•Updated Nov 10, 2024Nov 10, 2024

• tpv-metascheduler-api

  Public
  Metascheduler for TPV as Service

  Python

  •

  MIT License

  •5•0•5•1•Updated Nov 8, 2024Nov 8, 2024

• environmental_impact

  Public
  Environmental Impact

  MIT License

  •1•8•9•0•Updated Nov 7, 2024Nov 7, 2024

• operations

  Public
  usegalaxy.eu operations

  documentationoperationsusegalaxy-eu+ 1usegalaxy

  8•4•3•1•Updated Nov 7, 2024Nov 7, 2024

• WallE

  Public
  Ansible role for a python script that fetches (toolname filtered) running jobs, calculates checksums for all files in the jobworking directory and compares them to a database.

  securitymalware-analysis

  Python

  •

  MIT License

  •2•0•2•1•Updated Nov 6, 2024Nov 6, 2024

• vgcn

  Public
  Virtual Galaxy Compute Nodes (vgcn)

  ansiblebioinformaticspacker+ 2virtualizationusegalaxy

  Python

  •9•6•6•4•Updated Nov 6, 2024Nov 6, 2024

• microgalaxy_technical_paper_2024

  Public
  Jupyter Notebook

  •

  MIT License

  •2•0•2•0•Updated Nov 5, 2024Nov 5, 2024

• PathoGFAIR

  Public
  PathoGFAIR: Galaxy FAIR Workflows for Pathogen Detection and Samples Comparison

  visualizationdata-analysisgalaxy+ 2workflowspathogens

  Jupyter Notebook

  •

  MIT License

  •3•1•0•0•Updated Nov 2, 2024Nov 2, 2024

• shared-data

  Public
  Our shared data

  Shell

  •5•6•3•2•Updated Oct 31, 2024Oct 31, 2024

• vgcn-infrastructure

  Public
  Manage the VGCN Infrastructure https://github.com/usegalaxy-eu/vgcn/

  Python

  •

  GNU General Public License v3.0

  •6•4•1•2•Updated Oct 30, 2024Oct 30, 2024

• grafana-dashboards

  Public
  UseGalaxy's Grafana Dashboards

  3•2•0•0•Updated Oct 29, 2024Oct 29, 2024

• galaxy-beacon-import

  Public
  import variants from galaxy datasets to a beacon instance

  Python

  •

  MIT License

  •3•2•0•0•Updated Oct 22, 2024Oct 22, 2024

• docker-qupath

  Public
  Docker image for QuPath to be used as Galaxy IT

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• galaxy

  Public
  Data intensive science for everyone.

  Python

  •

  Other

  •1k•3•5•2•Updated Oct 16, 2024Oct 16, 2024

• ansible-galaxy-systemd

  Public
  Ansible roles for setting up SystemD for Galaxy

  Jinja

  •

  GNU General Public License v3.0

  •3•2•2•0•Updated Oct 7, 2024Oct 7, 2024

• ena-upload-cli

  Public
  ENA upload tool - script your Open Data upload to the European Nucleotide Archive

  Python

  •

  MIT License

  •15•28•6•0•Updated Sep 25, 2024Sep 25, 2024

• infrastructure

  Public
  All of Galaxyproject EU's cloud infrastructure.

  HCL

  •25•8•1•1•Updated Sep 25, 2024Sep 25, 2024

• gpu-access-sync

  Public
  Python

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Sep 24, 2024Sep 24, 2024

• intergalactic-most-wanted-list

  Public
  A database for malware checksums for use with the WallE malware cleanup script

  MIT License

  •1•1•0•0•Updated Sep 18, 2024Sep 18, 2024

• galaxy-social-assistant

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 11, 2024Sep 11, 2024

• gdpr

  Public
  Documentation regarding GDPR compliance, Privacy Policy, and ToS

  CSS

  •8•1•7•2•Updated Sep 11, 2024Sep 11, 2024

• ansible-fw-glxeu-generic

  Public
  Generic firewall setup for usegalaxy-eu

  0•0•0•1•Updated Sep 5, 2024Sep 5, 2024

• quota-sync

  Public
  Sync responses + approvals from a Google From with quotas in a live Galaxy instance

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• pulsar-deployment

  Public
  Various terraform stuff

  HCL

  •

  GNU General Public License v3.0

  •13•3•1•2•Updated Aug 30, 2024Aug 30, 2024

• pulsar-network-docs

  Public
  Documentation for the Galaxy Pulsar network

  Python

  •4•1•4•2•Updated Aug 20, 2024Aug 20, 2024

• temporary-tools

  Public
  Non-reproducible, local tools that were installed to cn029

  HTML

  •6•1•0•0•Updated Aug 15, 2024Aug 15, 2024