Repositories list

• EP2M2

  Public
  Metabolomics target analyzes manager

  websitemetabolomicsinrae+ 1p2m2

  TypeScript

  •1•1•20•0•Updated Nov 13, 2024Nov 13, 2024

• encoder-ontology-match-abstract

  Public
  Python

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• ChEBI_REST_API

  Public
  Java

  •

  MIT License

  •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

• dataset-description-metabolites-litsc

  Public
  JavaScript

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• forum-diseases-chem-nextflow

  Public
  Nextflow scripts to generate a release of the FORUM project

  Nextflow

  •0•1•0•0•Updated Jul 9, 2024Jul 9, 2024

• DiscoveryWorkout

  Public
  HTML

  •0•0•0•0•Updated Jul 7, 2024Jul 7, 2024

• plant_metabolic_flows_influx_si

  Public
  Shell

  •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• tp-discovery-websempilot

  Public
  HTML

  •1•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• oligopeptides_matching

  Public
  In order to compute from amino acids molecular weight the putative oligomers of various oligomerization degree

  R

  •

  Other

  •0•0•4•0•Updated Jun 27, 2024Jun 27, 2024

• workflow-kg-plants-taxon-compound

  Public
  A workflow that generates a knowledge graph from a list of DOIs using the tool '# End-to-end Relation Extraction on the natural-product literature' from IDIAP.

  Python

  •0•0•4•0•Updated May 6, 2024May 6, 2024

• facade-scalajs-N3.js

  Public
  ScalaJS facade to build N3.js application

  Scala

  •0•0•0•0•Updated Apr 15, 2024Apr 15, 2024

• facade-scalajs-comunica-query-sparql

  Public
  Scala.js Facade of the Comunica SPARQL RDFJS Init Actor

  Scala

  •0•0•0•0•Updated Apr 15, 2024Apr 15, 2024

• facade-scalajs-rdfxml-streaming-parser

  Public
  Scala.js Facade of the RDF/XML Streaming Parser library

  Scala

  •0•0•0•0•Updated Apr 15, 2024Apr 15, 2024

• tools-metabolomics

  Public
  Galaxy tools for metabolomics maintained by Workflow4Metabolomics

  R

  •

  GNU General Public License v3.0

  •27•0•0•0•Updated Apr 11, 2024Apr 11, 2024

• service-flask-thermorawfileparser-openms

  Public
  A simple HTML interface for converting RAW format to MzML, MzXML, and MGF files.

  flaskmetabolomicsopenms+ 1thermofileparser

  Python

  •0•0•1•0•Updated Apr 9, 2024Apr 9, 2024

• stream-reader-mzxml

  Public
  A Scala library specializing in stream processing of mzXML files, based on FS2

  scalastreamfs2+ 1mass-spectrometry

  Scala

  •0•0•1•0•Updated Feb 21, 2024Feb 21, 2024

• discovery

  Public
  Discovery provides a powerful toolset for developers who are looking to build UIs using RDF data in an a robust software development process

  scalasparqlrdf+ 5discoverysemantic-webscalajssparql-query-builderendpoint-discovery

  Scala

  •

  MIT License

  •1•0•41•2•Updated Feb 21, 2024Feb 21, 2024

• hubportal

  Public
  The P2M2 Central Hub serves as the centralized gateway to the dematerialized tools developed by the P2M2 metabolomics platform

  MIT License

  •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

• docker-XcmsViewer

  Public
  Dockerized XcmsViewer

  R

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Feb 19, 2024Feb 19, 2024

• service-p2m2tools-api

  Public
  Service to parse the formats of the metabolomics data acquisition devices of the P2M2 platform

  Scala

  •

  MIT License

  •0•0•4•1•Updated Jan 18, 2024Jan 18, 2024

• p2m2tools

  Public
  Development of bioinformatics tools/software related to P2M2 metabolomics platform activities

  scalafunctional-programmingmetabolomics+ 2metabolomics-studiesinrae

  Scala

  •

  MIT License

  •0•1•9•0•Updated Jan 18, 2024Jan 18, 2024

• xcms-p2m2-tools

  Public
  Scala

  •

  MIT License

  •0•0•0•0•Updated Nov 17, 2023Nov 17, 2023

• mzxml-glucosinolate-analyser

  Public
  Ion detection eligible for characterization of glucosinolate and phenolic metabolites

  Scala

  •0•0•10•2•Updated Sep 28, 2023Sep 28, 2023

• mgf-p2m2-tools

  Public
  Scala parser for generic MGF mascot files containing MS/MS data

  Scala

  •

  MIT License

  •0•0•2•0•Updated Jul 22, 2023Jul 22, 2023

• ihm-githubio-gcms2isocor

  Public
  provides a simple interface for ingesting gcms files and integrating these results into isocor format

  Scala

  •

  MIT License

  •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

• service-rdf-database-deployment

  Public
  Scala

  •0•0•4•1•Updated Jun 19, 2023Jun 19, 2023

• collect-target-metabolomics-study

  Public
  Scala

  •

  MIT License

  •0•0•11•0•Updated May 5, 2023May 5, 2023

• positional-carbon13-enrichment

  Public
  Positional 13C-enrichments were calculated by combining mean 13C-enrichments of multiple fragments that shared part of the same carbon backbone

  Scala

  •

  MIT License

  •0•0•1•0•Updated Apr 5, 2023Apr 5, 2023

• ci-r-base-devtools

  Public
  docker image P2M2 CI/CD

  Dockerfile

  •0•0•0•0•Updated Mar 16, 2023Mar 16, 2023

• msd-metdisease-database-chemont-parents-builder

  Public
  Scala

  •0•0•0•0•Updated Mar 7, 2023Mar 7, 2023