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@BioMeDS BioMedical Data Science

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    13 repositories

    • shiny-gggenomes

      Public
      shiny/shinylive demo for gggenomes
      visualizationalignmentggplotshiny-r
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • mudRapp-seq

      Public
      In-situ sequencing with multiple direct RNA-assisted padlock probing (mudRapp-seq)
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • onboarding-base-module

      Public
      MIT License
      •0•0•9•0•Updated Sep 16, 2024Sep 16, 2024

    • DTI_Processing_Snakemake

      Public
      Python
      •1•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • Python_Course_WS23

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • metabarcoding_pipeline

      Public
      R
      •
      MIT License
      •2•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • starfish

      Public
      starfish: unified pipelines for image-based transcriptomics
      Python
      •
      MIT License
      •67•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • onboarding

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Jul 6, 2023Jul 6, 2023

    • CTFd

      Public
      CTFs as you need them
      Python
      •
      Apache License 2.0
      •2.1k•0•0•0•Updated Feb 13, 2023Feb 13, 2023

    • ukbb_cardiac

      Public
      Some code for processing and analysing UK Biobank cardiac MR images.
      Python
      •
      Apache License 2.0
      •66•0•0•0•Updated Sep 1, 2022Sep 1, 2022

    • torchio

      Public
      Medical imaging toolkit for deep learning
      Python
      •
      Apache License 2.0
      •240•0•0•0•Updated Jun 24, 2022Jun 24, 2022

    • GWAS

      Public
      R
      •
      MIT License
      •9•0•0•0•Updated Apr 11, 2022Apr 11, 2022

    • minimal-git-example

      Public
      A minimal example to show how git works
      Python
      •
      MIT License
      •0•0•0•1•Updated Mar 4, 2022Mar 4, 2022