diff --git a/c302/__init__.py b/c302/__init__.py index 5cfd3675..df0aaed3 100755 --- a/c302/__init__.py +++ b/c302/__init__.py @@ -451,6 +451,7 @@ def elem_in_coll_matches_conn(coll, conn): def _get_cell_info(bnd, cells): + #print('Getting cell info for %s'%cells) if bnd is None: return None all_neuron_info = collections.OrderedDict() @@ -1494,4 +1495,46 @@ def main(): if __name__ == '__main__': - main() + + import sys + + if '-cache' in sys.argv: + print('Starting c302...') + from c302.ConnectomeReader import PREFERRED_MUSCLE_NAMES + from c302.ConnectomeReader import PREFERRED_NEURON_NAMES + + all_info = {'neuron_info':{}, 'muscle_info':{}} + + from owmeta_core.bundle import Bundle + + from owmeta_core import __version__ as owc_version + from owmeta import __version__ as owmeta_version + + ver_info = 'owmeta v%s (owmeta core v%s)'%(owmeta_version,owc_version) + + with Bundle('openworm/owmeta-data', version=6) as bnd: + + for n in PREFERRED_NEURON_NAMES: + + ani, _all_muscle_info = _get_cell_info(bnd, [n]) + + print(' > %s; %s'%(ani[n], _all_muscle_info)) + all_info['neuron_info'][n] = (str(ani[n][0]),list(ani[n][1]),list(ani[n][2]),list(ani[n][3]),ani[n][4],ani[n][5]) + + for n in PREFERRED_MUSCLE_NAMES: + + _all_neuron_info, ami = _get_cell_info(bnd, [n]) + + if not n == 'MVULVA' and not n == 'MANAL': + ow_name = n[1:] if n[3]!='0' else '%s%s'%(n[1:3],n[-1]) + print(' > %s (%s): %s; %s'%(n, ow_name, _all_neuron_info, ami)) + + all_info['muscle_info'][n] = (str(ami[ow_name][0]),list(ami[ow_name][1]),list(ami[ow_name][2]),list(ami[ow_name][3]),ami[ow_name][4],ami[ow_name][5]) + + import json + + with open('c302/data/owmeta_cache.json', 'w') as fp: + json.dump(all_info, fp, sort_keys=True, indent=4) + + else: + main() diff --git a/c302/data/owmeta_cache.json b/c302/data/owmeta_cache.json new file mode 100644 index 00000000..ae47c214 --- /dev/null +++ b/c302/data/owmeta_cache.json @@ -0,0 +1,6037 @@ +{ + "muscle_info": { + "MDL01": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL1", + "0 0.6 0" + ], + "MDL02": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL2", + "0 0.6 0" + ], + "MDL03": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL3", + "0 0.6 0" + ], + "MDL04": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL4", + "0 0.6 0" + ], + "MDL05": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL5", + "0 0.6 0" + ], + "MDL06": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL6", + "0 0.6 0" + ], + "MDL07": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL7", + "0 0.6 0" + ], + "MDL08": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL8", + "0 0.6 0" + ], + "MDL09": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL9", + "0 0.6 0" + ], + "MDL10": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL10", + "0 0.6 0" + ], + "MDL11": [ + "BodyWallMuscle()", + [], + [], + [], + "? (Mu) DL11", + "0 0.6 0" + ], + "MDL12": [ + "BodyWallMuscle()", + [], + [], + [], + "? 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