[PRE REVIEW]: High-performance estimation of Higher-Order Interactions from multivariate data

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Submitting author: @EtienneCmb (Etienne Combrisson)
Repository: https://github.com/brainets/hoi
Branch with paper.md (empty if default branch): paper
Version: v0.0.1
Editor: Pending
Reviewers: Pending
Managing EiC: Chris Vernon

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.05 s (1521.1 files/s, 157944.4 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          45           1100           1853           2572
SVG                              1              0              0            729
TeX                              2             50              0            465
reStructuredText                14            187            144            207
YAML                             5             28             11            123
Markdown                         2             17              0             71
HTML                             2              6              1             48
DOS Batch                        1              8              1             26
TOML                             1              1              0             16
make                             1              4              7              9
-------------------------------------------------------------------------------
SUM:                            74           1401           2017           4266
-------------------------------------------------------------------------------

Commit count by author:

   139	EtienneCmb
    66	Dishie2498
    10	Pierre Robiglio
     9	Mattehub
     7	Onur Ates
     7	dependabot[bot]
     3	Matteo NERI
     2	Andrea Brovelli
     1	Christian Ferreyra
     1	Etienne Combrisson

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Paper file info:

📄 Wordcount for paper.md is 774

✅ The paper includes a Statement of need section

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License info:

✅ License found: BSD 3-Clause "New" or "Revised" License (Valid open source OSI approved license)

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⚠️ An error happened when generating the pdf. Problem with affiliations for Christian Ferreyra, perhaps the affiliations index need quoting?.

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1103/PhysRevE.100.032305 is OK
- 10.3390/e21090869 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Towards an extended taxonomy of information dynami...
- No DOI given, and none found for title: Nonnegative decomposition of multivariate informat...
- No DOI given, and none found for title: The physics of higher-order interactions in comple...
- No DOI given, and none found for title: A Tutorial for Information Theory in Neuroscience
- No DOI given, and none found for title: Beyond normal: On the evaluation of mutual informa...
- No DOI given, and none found for title: Neural interactions in the human frontal cortex di...
- No DOI given, and none found for title: An information-theoretic approach to hypergraph ps...
- No DOI given, and none found for title: Estimation of Shannon differential entropy: An ext...
- No DOI given, and none found for title: Information decomposition and the informational ar...

❌ MISSING DOIs

- 10.1101/2020.09.22.308981 may be a valid DOI for title: A synergistic core for human brain evolution and c...
- 10.1103/physrevresearch.5.013025 may be a valid DOI for title: Gradients of O-information: Low-order descriptors ...
- 10.4135/9781412959384.n229 may be a valid DOI for title: A mathematical theory of communication
- 10.1016/j.nbd.2022.105918 may be a valid DOI for title: Genuine high-order interactions in brain networks ...
- 10.1101/2020.03.17.995886 may be a valid DOI for title: High-order interdependencies in the aging brain
- 10.21105/joss.01081 may be a valid DOI for title: IDTxl: The Information Dynamics Toolkit xl: a Pyth...
- 10.21105/joss.00738 may be a valid DOI for title: “dit“: a Python package for discrete information t...
- 10.21105/joss.01609 may be a valid DOI for title: infotheory: A C++/Python package for multivariate ...
- 10.1371/journal.pcbi.1006343 may be a valid DOI for title: PyPhi: A toolbox for integrated information theory
- 10.1103/physrevresearch.5.013025 may be a valid DOI for title: Gradients of O-information: Low-order descriptors ...
- 10.1103/physreve.91.052802 may be a valid DOI for title: Exploration of synergistic and redundant informati...

❌ INVALID DOIs

- None