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get_session_info.m
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get_session_info.m
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function info = get_session_info(directory)
% STEP 1: GET FULL PATH FOR DIRECTORY
directory = get_full_path(directory);
directory_contents = dir(directory);
%%
% STEP 2: FIND NUMBER OF RECORDING SESSIONS
settingsPattern = '^settings(_\d+)?\.xml$';
isSettingsFile = regexp({directory_contents.name}, settingsPattern, 'once');
numSessions = length(cell2mat(isSettingsFile));
for s = numSessions:-1:1 % iterate backwards to preallocate
if s == 1
sessStr = '';
else
sessStr = ['_', num2str(s)];
end
%%
% STEP 3: PARSE THE 'SETTINGS.XML' FILE
settingsFilename = ['settings' sessStr '.xml'];
DOMnode = xmlread([directory filesep settingsFilename]);
xRoot = DOMnode.getDocumentElement;
processors = cell(0);
electrodes = cell(0);
% LOOP THROUGH TOP-LEVEL NODES
for i = 1:xRoot.getChildNodes.getLength-1
if strcmp(xRoot.item(i).getNodeName, 'SIGNALCHAIN')
xSignalChain = xRoot.item(i);
processorIndex = 0;
% LOOP THROUGH PROCESSOR NODES
for j = 1:xSignalChain.getChildNodes.getLength-1
if strcmp(xSignalChain.item(j).getNodeName, 'PROCESSOR')
processorIndex = processorIndex + 1;
xProcessor = xSignalChain.item(j);
nodeId = str2double(xProcessor.getAttributes.getNamedItem('NodeId').getValue);
processorName = char(xProcessor.getAttributes.getNamedItem('name').getValue);
processors{processorIndex,1} = nodeId;
processors{processorIndex,2} = processorName;
if strcmp(processorName, 'Filters/Spike Detector')
electrodeIndex = 0;
% LOOP THROUGH ELECTRODE NODES IN SPIKE DETECTOR
for k = 1:xProcessor.getChildNodes.getLength-1
if strcmp(xProcessor.item(k).getNodeName, 'ELECTRODE')
electrodeIndex = electrodeIndex + 1;
xElectrode = xProcessor.item(k);
electrodeName = char(xElectrode.getAttributes.getNamedItem('name').getValue);
numChannels = str2double(xElectrode.getAttributes.getNamedItem('numChannels').getValue);
channels = zeros(1, numChannels);
channelIndex = 0;
% LOOP THROUGH CHANNEL NODES FOR ELECTRODE
for m = 1:xElectrode.getChildNodes.getLength-1
if strcmp(xElectrode.item(m).getNodeName, 'SUBCHANNEL')
channelIndex = channelIndex + 1;
xChannel = xElectrode.item(m);
ch = str2double(xChannel.getAttributes.getNamedItem('ch').getValue);
channels(channelIndex) = ch;
end
end
electrodes{electrodeIndex,1} = electrodeName;
electrodes{electrodeIndex,2} = channels;
end
end
end
end
end
end
end
%%
% STEP 4: PARSE CONTINUOUS_DATA.OPENEPHYS TO GET CONTINUOUS FILENAMES
DOMnode = xmlread([directory filesep 'Continuous_Data' sessStr '.openephys']);
xRoot = DOMnode.getDocumentElement;
% gather recordings
xRecordings = {};
for kR = 1:xRoot.getChildNodes.getLength - 1
if strcmp(xRoot.item(kR).getNodeName, 'RECORDING')
recNum = str2double(xRoot.item(kR).getAttributes.getNamedItem('number').getValue);
xRecordings{recNum + 1} = xRoot.item(kR);
end
end
% to hold filenames
nRecordings = length(xRecordings);
processors(:, 3) = repmat({repmat({{}}, nRecordings, 1)}, size(processors, 1), 1);
% loop over recordings
for kR = 1:nRecordings
xRecording = xRecordings{kR};
if isempty(xRecording)
continue;
end
% loop over processors
for kP = 1:xRecording.getChildNodes.getLength - 1
if ~strcmp(xRecording.item(kP).getNodeName, 'PROCESSOR')
continue;
end
xProcessor = xRecording.item(kP);
nodeId = str2double(xProcessor.getAttributes.getNamedItem('id').getValue);
procInd = find([processors{:, 1}] == nodeId, 1);
if isempty(procInd)
warning('Recorded processor number %d not found in %s', nodeId, settingsFilename);
procInd = size(processors, 1) + 1;
processors{procInd, 1} = nodeId;
processors{procInd, 2} = 'Unknown Processor';
processors{procInd, 3} = repmat({{}}, nRecordings, 1);
end
% loop through channels
for kC = 1:xProcessor.getChildNodes.getLength - 1
if ~strcmp(xProcessor.item(kC).getNodeName, 'CHANNEL')
continue;
end
xChannel = xProcessor.item(kC);
filename = char(xChannel.getAttributes.getNamedItem('filename').getValue);
processors{procInd, 3}{kR}{end+1} = filename;
end
end
end
info(s).electrodes = electrodes;
info(s).processors = processors;
info(s).events_file = ['all_channels' sessStr '.events'];
info(s).messages_file = ['messages' sessStr '.events'];
end
end