tests.yml

name: tests

on:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main
      - develop

jobs:
  test:
    runs-on: ubuntu-latest

    strategy:
      matrix:
        python-version: [3.8, 3.9, 3.10]

    steps:
    - name: Checkout repository
      uses: actions/checkout@v2

    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install numpy pandas scipy tqdm
        pip install -r requirements.txt

    - name: Run tests with coverage
      run: |
        pytest --cov=pyphenopop --cov-report xml:coverage.xml

    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v4
      with:
          token: ${{ secrets.CODECOV_TOKEN }}
          file: ./coverage.xml
          flags: unittests
          name: codecov-umbrella
          fail_ci_if_error: true