2018-07-29 release

This is the correct version of:
https://github.com/oborel/obo-relations/releases/v2018-07-29

2018-07-29 release (DO NOT USE THIS ONE)

NOTE due to a release error many of the changes below were not incorporated. See instead https://github.com/oborel/obo-relations/releases/v2018-07-29b

commit f21b93e
Author: cmungall [email protected]
Date: Mon May 21 13:40:55 2018 -0700

First attempt at making atomic module, see https://github.com/INCATools/ontology-starter-kit/issues/50

Conflicts:
    src/ontology/ro-edit.owl

commit a216c15
Merge: ff3fd1f b26fa8a
Author: Chris Mungall [email protected]
Date: Sun Jul 29 20:13:53 2018 -0700

Merge pull request #232 from oborel/mortality_rate

Data property used to record increases in age-specific mortality rate

commit 7107c3e
Author: Jim Balhoff [email protected]
Date: Thu Jul 26 10:34:21 2018 -0400

Remove inverse expression super property for ‘enabled by’.

commit b26fa8a
Author: dosumis [email protected]
Date: Tue May 22 18:14:58 2018 +0100

Extended comments and refs.

commit d132eb9
Author: dosumis [email protected]
Date: Tue May 22 18:06:41 2018 +0100

Adding data property used to record increases in age-specific mortality rate

commit 38906e1
Author: cmungall [email protected]
Date: Fri May 11 13:34:28 2018 -0700

2018-05-11 release

commit 38906e1
Author: cmungall [email protected]
Date: Fri May 11 13:34:28 2018 -0700

• Fixed def of acts-upstream-of, Fixes #228

commit 7978166
Author: cmungall [email protected]
Date: Fri May 11 13:34:13 2018 -0700

• added involved in subPropertyOf active participant in

2018-03-28 release

Minor release, one change

commit 7a3e01a
Date: Wed Mar 28 16:12:35 2018 -0700

weakening domain constraint for has-modifier

2018-03-13 release

Original Ontology

• IRI: http://purl.obolibrary.org/obo/ro.owl
• VersionIRI: http://purl.obolibrary.org/obo/ro/releases/2018-01-05b/ro.owl

New Ontology

• IRI: http://purl.obolibrary.org/obo/ro.owl
• VersionIRI: http://purl.obolibrary.org/obo/ro/releases/2018-03-13/ro.owl

Report for classes

Class objects lost from source: 0

Class objects new in target: 0

Changed Class objects: 0

Report for properties

ObjectProperty objects lost from source: 0

ObjectProperty objects new in target: 7

New ObjectProperty : causally upstream of or within, negative effect

• causally upstream of or within, negative effect label causally upstream of or within, negative effect
• SubObjectPropertyOf( causally upstream of or within, negative effect causally upstream of or within )
• causally upstream of or within, negative effect created by cjm
• causally upstream of or within, negative effect is negative form of causally upstream of or within
• causally upstream of or within, negative effect creation date 2018-03-13T23:55:05Z

New ObjectProperty : causally upstream of or within, positive effect

• causally upstream of or within, positive effect label causally upstream of or within, positive effect
• causally upstream of or within, positive effect created by cjm
• SubObjectPropertyOf( causally upstream of or within, positive effect causally upstream of or within )
• causally upstream of or within, positive effect is positive form of causally upstream of or within
• causally upstream of or within, positive effect creation date 2018-03-13T23:55:19Z

New ObjectProperty : enables subfunction

• SubObjectPropertyOf( enables subfunction functionally related to )
• enables subfunction label enables subfunction
• enables subfunction definition Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
• enables subfunction created by cjm
• enables subfunction creation date 2018-01-25T23:20:13Z

New ObjectProperty : acts upstream of or within, positive effect

• acts upstream of or within, positive effect is positive form of acts upstream of or within
• acts upstream of or within, positive effect created by cjm
• acts upstream of or within, positive effect creation date 2018-01-26T23:49:30Z
• SubObjectPropertyOf( acts upstream of or within, positive effect acts upstream of or within )
• acts upstream of or within, positive effect seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect
• acts upstream of or within, positive effect label acts upstream of or within, positive effect

New ObjectProperty : acts upstream of or within, negative effect

• acts upstream of or within, negative effect is negative form of acts upstream of or within
• acts upstream of or within, negative effect label acts upstream of or within, negative effect
• acts upstream of or within, negative effect creation date 2018-01-26T23:49:51Z
• SubObjectPropertyOf( acts upstream of or within, negative effect acts upstream of or within )
• acts upstream of or within, negative effect created by cjm

New ObjectProperty : acts upstream of, positive effect

• acts upstream of, positive effect definition c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
• SubObjectPropertyOf( acts upstream of, positive effect acts upstream of or within, positive effect )
• SubObjectPropertyOf( acts upstream of, positive effect acts upstream of )
• acts upstream of, positive effect seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect
• acts upstream of, positive effect label acts upstream of, positive effect
• acts upstream of, positive effect creation date 2018-01-26T23:53:14Z
• acts upstream of, positive effect is positive form of acts upstream of
• acts upstream of, positive effect created by cjm

New ObjectProperty : acts upstream of, negative effect

• acts upstream of, negative effect definition c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
• acts upstream of, negative effect label acts upstream of, negative effect
• acts upstream of, negative effect creation date 2018-01-26T23:53:22Z
• SubObjectPropertyOf( acts upstream of, negative effect acts upstream of )
• acts upstream of, negative effect seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect
• acts upstream of, negative effect is negative form of acts upstream of
• SubObjectPropertyOf( acts upstream of, negative effect acts upstream of or within, negative effect )
• acts upstream of, negative effect created by cjm

Changed ObjectProperty objects: 12

Changes for: involved in positive regulation of

• Added
  • + [involved in p...

2018-01-22 release

Minor fix - updated imported GO

2018-01-05 release

v2018-01-05b

fixed release

2018-01-05 release-deprecated

v2018-01-05

new release

2017-07-19 Release

• 2017-07-19 Release

commit 48d0763
Merge: 67d2257 3b74b3a
Author: David Osumi-Sutherland [email protected]
Date: Wed Jul 19 20:02:09 2017 +0100

Merge pull request #184 from oborel/has_ligand

Added has_ligand relation for GO

commit 3b74b3a
Author: David Osumi-Sutherland [email protected]
Date: Wed Jul 19 19:58:08 2017 +0100

Added has_ligand relation for GO

commit 67d2257
Merge: 38fe841 7cfd62c
Author: Chris Mungall [email protected]
Date: Wed Jul 19 08:21:36 2017 -0700

Merge pull request #183 from balhoff/issue-182

Removed transitivity from 'negatively regulates'.

commit 38fe841
Author: David Osumi-Sutherland [email protected]
Date: Wed Jul 19 16:15:51 2017 +0100

-Fixed minor typo in direct reg rel defs.

commit 7cfd62c
Author: Jim Balhoff [email protected]
Date: Wed Jul 19 11:09:11 2017 -0400

Removed transitivity from 'negatively regulates'.

commit 1c6eb42
Author: David Osumi-Sutherland [email protected]
Date: Tue Jul 18 08:48:45 2017 +0100

Fixed duplicate rule; improved annotation rules; modified rule <enabling an MF enables its parts< to correct and make clearer.

commit 687371d
Author: David Osumi-Sutherland [email protected]
Date: Mon Jul 17 12:10:12 2017 +0100

Fixes #180

commit 03945ad
Merge: d13b87a 58fa91c
Author: Chris Mungall [email protected]
Date: Fri Jun 30 15:40:27 2017 -0700

Merge pull request #179 from mbrush/daf-terms

Added relations requested for DAF spec in #149

commit 58fa91c
Author: Matthew Brush [email protected]
Date: Fri Jun 30 13:30:46 2017 -0700

added relations requested for DAF spec in #149
added exacerbates condition, consition exacerbated by, condition aameliorated by, and changed label of is preventative for condition to ameliorates condition.
also made minor updates to text of definitions for causes or contributes to condition relations, as noted in #149

2017-06-15 release

• 2017-06-15 Release

commit 7bf8fa4
Author: Chris Mungall [email protected]
Date: Mon Jun 12 08:50:53 2017 -0700

NR: realized-in-response-to

gitowl ||  subject: http://purl.obolibrary.org/obo/RO_0009501
gitowl ++  AnnotationAssertion(dc:contributor obo:RO_0009501 "Marie Angelique Laporte")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0009501> contributor "Marie Angelique Laporte"
gitowl ++  SubObjectPropertyOf(obo:RO_0009501 obo:RO_0002410)
gitowl ||      realized in response to SubPropertyOf causally related to
gitowl ++  Declaration(ObjectProperty(obo:RO_0009501))
gitowl ||      ObjectProperty: realized in response to
gitowl ++  AnnotationAssertion(obo:IAO_0000112 obo:RO_0009501 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposu
gitowl ||      <http://purl.obolibrary.org/obo/RO_0009501> IAO_0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response
gitowl ++  ObjectPropertyDomain(obo:RO_0009501 obo:BFO_0000017)
gitowl ||      realized in response to Domain BFO_0000017
gitowl ++  AnnotationAssertion(obo:IAO_0000115 obo:RO_0009501 "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environ
gitowl ||      <http://purl.obolibrary.org/obo/RO_0009501> IAO_0000115 "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is a
gitowl ++  AnnotationAssertion(dc:contributor obo:RO_0009501 "David Osumi-Sutherland")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0009501> contributor "David Osumi-Sutherland"
gitowl ++  AnnotationAssertion(rdfs:label obo:RO_0009501 "realized in response to"@en)
gitowl ||      <http://purl.obolibrary.org/obo/RO_0009501> label "realized in response to"@en
gitowl ++  AnnotationAssertion(dc:contributor obo:RO_0009501 "Chris Mungall")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0009501> contributor "Chris Mungall"
gitowl ++  ObjectPropertyRange(obo:RO_0009501 obo:BFO_0000015)
gitowl ||      realized in response to Range BFO_0000015
gitowl ++  AnnotationAssertion(obo:IAO_0000112 obo:RO_0009501 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in
gitowl ||      <http://purl.obolibrary.org/obo/RO_0009501> IAO_0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is re
gitowl ++  AnnotationAssertion(dc:contributor obo:RO_0009501 "Austin Meier")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0009501> contributor "Austin Meier"
gitowl ||
gitowl ||  subject: NO_SUBJECT
gitowl ++  SubObjectPropertyOf(ObjectPropertyChain(obo:BFO_0000054 obo:RO_0002404) obo:RO_0009501)
gitowl ||      BFO_0000054 o causally downstream of SubPropertyOf realized in response to

commit 8875568
Author: Chris Mungall [email protected]
Date: Mon Jun 12 08:36:12 2017 -0700

adding conditions to def of exposure stimulus

commit 9eb0021
Author: James A. Overton [email protected]
Date: Tue Jun 6 14:54:09 2017 -0400

Fix typos in exposure relation definitions

commit 820c6f1
Author: Chris Mungall [email protected]
Date: Mon Jun 5 11:50:55 2017 -0700

Added grouping class for different kinds of exposures,
using as domain for exposure relations.
See: https://github.com/Planteome/plant-environment-ontology/issues/94

commit af62b82
Author: Chris Mungall [email protected]
Date: Mon Jun 5 10:52:54 2017 -0700

NRR: 'has exposure stimulus', fixes #172
gitowl ||  Diffing:  src/ontology/ro-edit.owl
gitowl ||
gitowl ||  subject: http://purl.obolibrary.org/obo/RO_0002241
gitowl --  SubObjectPropertyOf(obo:RO_0002241 obo:RO_0002244)
gitowl ||      has exposure stressor SubPropertyOf related via exposure to
gitowl ++  SubObjectPropertyOf(obo:RO_0002241 obo:RO_0002309)
gitowl ||      has exposure stressor SubPropertyOf has exposure stimulus
gitowl ||
gitowl ||  subject: http://purl.obolibrary.org/obo/RO_0002309
gitowl ++  SubObjectPropertyOf(obo:RO_0002309 obo:RO_0002244)
gitowl ||      has exposure stimulus SubPropertyOf related via exposure to
gitowl ++  AnnotationAssertion(dc:contributor obo:RO_0002309 "Chris Mungall")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002309> contributor "Chris Mungall"
gitowl ++  AnnotationAssertion(dc:contributor obo:RO_0002309 "Austin Meier")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002309> contributor "Austin Meier"
gitowl ++  AnnotationAssertion(dc:contributor obo:RO_0002309 "Marie Angelique Laporte")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002309> contributor "Marie Angelique Laporte"
gitowl ++  AnnotationAssertion(rdfs:label obo:RO_0002309 "has exposure stimulus")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002309> label "has exposure stimulus"
gitowl ++  AnnotationAssertion(obo:IAO_0000115 obo:RO_0002309 "A relationship between an exposure event or process and any agent, stimulus, activity, or event that c
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002309> IAO_0000115 "A relationship between an exposure event or process and any agent, stimulus, activity, or eve
gitowl ++  AnnotationAssertion(oboInOwl:creation_date obo:RO_0002309 "2017-06-05T17:35:04Z"^^xsd:dateTime)
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002309> creation_date "2017-06-05T17:35:04Z"^^dateTime
gitowl ++  Declaration(ObjectProperty(obo:RO_0002309))
gitowl ||      ObjectProperty: has exposure stimulus
gitowl ++  AnnotationAssertion(oboInOwl:created_by obo:RO_0002309 "cjm"^^xsd:string)
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002309> created_by "cjm"^^string