Get XPO ready for curation

[matentzn]

• Implement multi-anatomy sync pipeline #46
• Additional Behavioral terms #39
• Obsolete select 'region' terms.  #45

[matentzn]

@seger can you link all the tickets here that absolutely need to happen before we XPO can go into the XenBase curation tools?

[seger]

• Several standard PATO terms to apply to most XAO terms. #48
• There are some classes with multiple labels. Investigate! #41
• Accidental duplicates #40
• Ids should be assigned automatically if left blank #4
• Make sure correct XAO is references in Pattern Generation Pipeline #3

Term obsoletions

• Obsolete terms for multicilliated cells in epidermal tissues. #70
• Tail curvature terms for obsoletion. #68
• Obsolete paralysed muscle in limb terms. #67
• Obsolete 'blistered' terms #65
• Obsolete some edematous terms. #63
• Obsolete truncation terms #62
• Obsolete term 'increased width of hindbrain' (XPO:0103672). #61
• Obsolete overspecific mouth terms. #60
• Remove terms ending in 'in left'. #59
• Obsolete 'abnormal(ly) incomplete structure of cartilage element in head (T)'(XPO:0116167) and its children  #57
• Obsolete all 'abnormal(ly) disorganized of [XAO] (T)' terms #56
• Obsolete XPO:0115644. #55
• Obsolete or remove 'malformed' terms. #52
• Obsolete 'bifurcated anterior-posterior axis' (XPO:0103469) #51
• Obsolete several 'whole organism terms' for dorsalization/ventralization etc.. #49
• Obsolete select 'region' terms.  #45
• XPO:0115852 definition is broken #44
• Obsolete 'decreased diameter of eye' (XPO:0115418). #43
• Obsolete or rename 'microphthalmia' term (XPO:0107252). #42

Term additions (as many as are feasible by 13-Sep)

• Create abnormal A-P axis bending terms. #78
• Add heart processes from GO. #73
• New terms for increased and decreased number for cell types. #71
• Additional neural crest cell migration terms. #69
• Add term for 'abnormally paralyzed tail'. #66
• Create new edematous terms. #64
• New Cilium term requests #58
• Create higher level gut looping term. #54
• Add term for 'abnormal heart looping' #53
• Terms for dorsalization, ventralization, anterioralization and posterioralization. #50
• Additional Behavioral terms #39
• Add absent behavior grouping term #38
• Add absent biological process grouping term #37