From b854f7d11ac884c5201078774a63d6fefb434041 Mon Sep 17 00:00:00 2001 From: Damien Goutte-Gattat Date: Thu, 12 Sep 2024 17:08:32 +0100 Subject: [PATCH] Remap ZFA's 'coelom'. ZFA's 'coelom' (ZFA:0001438) is mapped to Uberon's 'coelemic cavity lumen' (UBERON:0002323). This is incorrect as the ZFA terms refers to a multi-tissue structure and therefore to a material entity, whereas the Uberon term refers to the anatomical cavity *within* the coelom (an immaterial entity). Uberon has another term to refer to the (material) anatomical structure that forms the coelemic cavity: 'coelom' (UBERON:0011997), the ZFA term should be mapped to that term instead. partially addresses #3353 --- src/ontology/uberon-edit.obo | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 14b47dd84..38baff547 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -47474,11 +47474,9 @@ xref: RETIRED_EHDAA2:0003186 xref: SCTID:361348008 xref: TAO:0001438 xref: UMLS:C0333343 {source="ncithesaurus:Cavity"} -xref: ZFA:0001438 is_a: UBERON:0002553 ! anatomical cavity relationship: luminal_space_of UBERON:0011997 ! coelom relationship: transformation_of UBERON:0003886 {evidence="definitional"} ! future coelemic cavity lumen -property_value: external_definition "Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities[ZFA]." xsd:string {date_retrieved="2012-09-12", external_class="ZFA:0001438", ontology="ZFA", source="ZFIN:curator"} property_value: external_definition "The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities[BTO]." xsd:string {date_retrieved="2012-09-12", external_class="BTO:0001707", ontology="BTO", source="BTO"} property_value: taxon_notes "In mammals it forms the peritoneal, pleural, and pericardial cavities" xsd:string @@ -149787,6 +149785,7 @@ synonym: "haemocoelom" NARROW [] synonym: "schizocoelom" NARROW [] xref: EHDAA2:0004731 xref: Wikipedia:Coelom +xref: ZFA:0001438 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure relationship: in_taxon NCBITaxon:33213 ! Bilateria relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} ! Acoelomorpha