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HPDB Data

Genome database used in HPDB, consists of 133 strains of Helicobacter Pylori. The list of strain is stored in strains_list.csv.

Each genome consists of:

  • Complete genome in FASTA format (downloaded from NCBI)
  • Annotation result by RAST

Automatic scripts used to process those files are also included without document.

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  • Python 100.0%