From 9209ddfffeef5658114a63dc0184b4899f4a05b0 Mon Sep 17 00:00:00 2001 From: nservant Date: Thu, 11 Jun 2020 10:26:10 +0200 Subject: [PATCH] [DOC] update FAQ --- doc/FAQ.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/FAQ.md b/doc/FAQ.md index 8abab76..783cdbc 100644 --- a/doc/FAQ.md +++ b/doc/FAQ.md @@ -3,7 +3,7 @@ ### Can I use HiC-Pro with the Arima Hi-C Kit ? Yes, the LIGATION_SITE variable from the configuration file can contain multiple ligation motifs (comma separated). -Regarding the Arima kit, as there is two restiction motifs (GATC and GANT), the possible ligation motifs should be GATCGATC, GATCGANT, GANTGATC, GANTGANT. +Regarding the Arima kit, as there is two restiction motifs (^GATC and G^ANTC), the possible ligation motifs should be GATCGATC,GANTGATC,GANTANTC,GATCANTC. Leading to 25 possible ligation motifs when the 'N' are replaced by 'A', 'C', 'G', 'T'. Since HiC-Pro version 2.11.3, 'N' base are automatically recognized. For older version, please specify all possible ligation motifs.