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Macro.ijm
29 lines (24 loc) · 1015 Bytes
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Macro.ijm
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input_dir = getDirectory("Directory where files will be analyzed");
output_dir = getDirectory("Select output file");
// filename = getFileList(path);
// newDir = path + "Analyse d'image colored" + File.separator;
// File.makeDirectory(newDir);
// run("Channels Tool...");
filelist = getFileList(input_dir)
for (i = 0; i < lengthOf(filelist); i++) {
if (endsWith(filelist[i], ".tif")) {
open(input_dir + File.separator + filelist[i]);
title = getTitle;
// stack= getSliceNumber();
myNSlices=nSlices();
getDimensions(width, height, channels, slices, frames);
print(width, height, channels, slices, frames);
for(channelNo = 1;channelNo <= channels; channelNo++) {
for(sliceNo = 1;sliceNo <= slices; sliceNo++) {
Stack.setChannel(channelNo);
Stack.setSlice(sliceNo);
saveAs("tif", output_dir + filelist[i] + '_' + sliceNo + '_' + channelNo);
}
}
}
}