Skip to content

Issues: nrbennet/dl_binder_design

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

33 Open 39 Closed
33 Open 39 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Multimer and Alphafold3 prediction
#98 opened Oct 31, 2024 by Kangfengyuuuu
Potential bug in the assignment of fixed positions to chains
#96 opened Oct 6, 2024 by ahof1704
Why can't get a complex after af2 relax prediction
#95 opened Sep 18, 2024 by uioQPS
Parallelization?
#93 opened Aug 21, 2024 by Epannec
SCOPData Deprecated in Latest Biopython
#92 opened Aug 13, 2024 by mnoyes68
weird random error No such file or directory: 'temp.pdb' and -temperature: command not found
#89 opened Aug 1, 2024 by 18217265596
FileNotFoundError in dl_binder_design when running multiple silent files in parallel
#88 opened Jul 27, 2024 by xuqiqin
Issue with predict.py utput
#87 opened Jul 27, 2024 by Bilal0101-debug
1
in af2_initial_guess/predict.py PDB mode skips checkpoints due to inconsistent naming in self.finished_structs
#86 opened Jul 25, 2024 by xuqiqin
1
dl_binder_design af2_initial_guess not functioning
#85 opened Jul 24, 2024 by A2t3m15
1
dl_interface_design.py does not like scaffolds with periods
#84 opened May 14, 2024 by drewschaub
An error occurred during the testing of the ProteinMPNN FastRelax Environment.
#83 opened May 9, 2024 by AIM132
2
In lab experiment, binding affinity is pretty strong, but pae_interaction is only around 28
#82 opened Apr 26, 2024 by Huilin-Li
3
Some confusion about the results
#81 opened Apr 24, 2024 by ghost
Unable to connect to GPU
#80 opened Apr 23, 2024 by david1234janitor
1
Any chance to share a docker or apptainer file?
#78 opened Apr 15, 2024 by yilunqi
insert_Rosetta_chainbreaks has an incorrect method signature
#76 opened Apr 2, 2024 by jonlevi
Complex error - cuDNN/CuFFT/Numpy version(?)
#75 opened Mar 19, 2024 by Avidhoot26
1
For reproducing RFdiffusion experiment
#74 opened Mar 15, 2024 by haoyuanli66
Question about AF2 model weights
#73 opened Mar 4, 2024 by Artolomeus
2
error with af2_binder_design.yml - ImportError: cannot import name 'SCOPData' from 'Bio.Data - wrong version of biopython
#72 opened Feb 20, 2024 by drewschaub
1
Floating point exception (Segmentation fault) when testing the conda env from af2_binder_design.yml
#68 opened Jan 29, 2024 by daniel-sali
3
Sampling Temperature
#66 opened Jan 21, 2024 by johnny-rodriguez
Majority of the sequence is composed of lysines
#65 opened Jan 17, 2024 by ackbar03
1
<class 'IndexError'> when using dl_interface_design.py
#56 opened Nov 28, 2023 by aw10279
4
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.