diff --git a/README.rst b/README.rst index e6f2fe14..7cb21498 100644 --- a/README.rst +++ b/README.rst @@ -66,6 +66,11 @@ HOWTO 101 In a nutshell -- ``heudiconv`` is given a file tree of DICOMs, and it produces a restructured file tree of NifTI files (conversion handled by `dcm2niix`_) with accompanying metadata files. The input and output structure is as flexible as your data, which is accomplished by using a Python file called a ``heuristic`` that knows how to read your input structure and decides how to name the resultant files. +You can run your conversion automatically (which will produce a ``.heudiconv`` directory storing the used parameters), or generate the default parameters, edit them to customize file naming, and continue conversion via an additional invocation of `heudiconv`: + +.. image:: figs/workflow.png + + ``heudiconv`` comes with `existing heuristics `_ which can be used as is, or as examples. For instance, the Heuristic `convertall `_ extracts standard metadata from all matching DICOMs. ``heudiconv`` creates mapping files, ``.edit.text`` which lets researchers simply establish their own conversion mapping.