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CHANGELOG.md

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Imaris Extensions Changelog

All notable changes to this repository are documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Each release should describe the changes using the following subsection types:

  • Added - new features.
  • Changed - changes in existing functionality.
  • Deprecated - soon to be removed features.
  • Removed - removed features.
  • Fixed - bug fixes.

When working on the package, add information under the "Unreleased" heading. In this manner the release notes are created incrementally, and do not require a concerted effort prior to a release.

Using a manual approach to create the release notes instead of automatically deriving them from the commits allows us to provide a high level description of the features and issues, yet provide details when those are needed. This is equivalent to summarizing all activity on a feature branch versus reporting all commits on that branch.

Unreleased

v0.1.0

Added

  • XTRegisterSameChannel: Registration of 2D or 3D images that share a common channel (correlation based affine alignment). Sample datasets are freely available on zenodo DOI. A video illustrating the usage of the extension is available on YouTube.
  • XTChannelArithmetic: Perform channel arithmetic, and more advanced channel manipulations via short SimpleITK expressions (short SimpleITK programs).
  • XTVirtualHEStain: Create a virtual H&E stain from a fluoresence image and add the RGB image as three new channels to the original image.
  • XTConfigureChannelSettings: Configure channel settings, name, description and visualization configuration specified via a csv file or an Imaris file.
  • XTExportChannelSettings: Export channel settings, name, description and visualization configuration to a csv file. The resulting csv file can be easily edited and then applied to other imaris files using the XTConfigureChannelSettings extension.