Extend test-single set to include readfiles with unmerged seqs of interest, alternate sample-info for NGS16S #21
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
- seqs were single index so were added to the test-single list in a standalone batch
- uses the test-single data set but includes extended sample-information with additional columns needed by classification pipeline
crosenth
approved these changes
Dec 1, 2020
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This MR extends the
test-singletest set by adding a single set of reads which are known to contain sequences that will not merge due to lack of overlap (#11). Additionally, there is an alternatesample-information-NGS16S.csvfile which extends the basic manifest to include additional fields relevant to the downstream NGS16S classification pipeline. An inputparams-ngs16s.jsonfile is also included and may be invoked for basic tests (assuming config as in README.md) as follows: