From 1fecdc400e3750662c8f81aabedf1bfca8368029 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Thu, 9 May 2024 11:07:51 +0000 Subject: [PATCH] Generate new screengrabs with rich-codex --- docs/images/nf-core-licences.svg | 93 +++--- docs/images/nf-core-list-rna.svg | 138 ++++----- docs/images/nf-core-list.svg | 108 +++---- docs/images/nf-core-modules-lint.svg | 115 +++---- docs/images/nf-core-subworkflows-create.svg | 110 ++++--- docs/images/nf-core-subworkflows-lint.svg | 314 +++++++++++++++++--- docs/images/nf-core-subworkflows-remove.svg | 103 ++++--- docs/images/nf-core-subworkflows-test.svg | 73 +++-- docs/images/nf-core-subworkflows-update.svg | 72 ++--- 9 files changed, 692 insertions(+), 434 deletions(-) diff --git a/docs/images/nf-core-licences.svg b/docs/images/nf-core-licences.svg index ebcce6f6c5..74aab4fa8e 100644 --- a/docs/images/nf-core-licences.svg +++ b/docs/images/nf-core-licences.svg @@ -1,4 +1,4 @@ - + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + + + + - + - + - - $ nf-core licences deepvariant - -                                          ,--./,-. -          ___     __   __   __   ___     /,-._.--~\ -    |\ | |__  __ /  ` /  \ |__) |__         }  { -    | \| |       \__, \__/ |  \ |___     \`-._,-`-, -                                          `._,._,' - -    nf-core/tools version 2.14.1 - https://nf-co.re - - + + $ nf-core licences deepvariant + +                                          ,--./,-. +          ___     __   __   __   ___     /,-._.--~\ +    |\ | |__  __ /  ` /  \ |__) |__         }  { +    | \| |       \__, \__/ |  \ |___     \`-._,-`-, +                                          `._,._,' + +    nf-core/tools version 2.14.1 - https://nf-co.re + + +INFO     Fetching licence information for 8 tools                                                    diff --git a/docs/images/nf-core-list-rna.svg b/docs/images/nf-core-list-rna.svg index 7018569625..c2bc73b4e9 100644 --- a/docs/images/nf-core-list-rna.svg +++ b/docs/images/nf-core-list-rna.svg @@ -19,114 +19,114 @@ font-weight: 700; } - .terminal-640568424-matrix { + .terminal-4017179797-matrix { font-family: Fira Code, monospace; font-size: 20px; line-height: 24.4px; font-variant-east-asian: full-width; } - .terminal-640568424-title { + .terminal-4017179797-title { font-size: 18px; font-weight: bold; font-family: arial; } - .terminal-640568424-r1 { fill: #c5c8c6 } -.terminal-640568424-r2 { fill: #98a84b } -.terminal-640568424-r3 { fill: #9a9b99 } -.terminal-640568424-r4 { fill: #608ab1 } -.terminal-640568424-r5 { fill: #d0b344 } -.terminal-640568424-r6 { fill: #c5c8c6;font-weight: bold } -.terminal-640568424-r7 { fill: #868887 } + .terminal-4017179797-r1 { fill: #c5c8c6 } +.terminal-4017179797-r2 { fill: #98a84b } +.terminal-4017179797-r3 { fill: #9a9b99 } +.terminal-4017179797-r4 { fill: #608ab1 } +.terminal-4017179797-r5 { fill: #d0b344 } +.terminal-4017179797-r6 { fill: #c5c8c6;font-weight: bold } +.terminal-4017179797-r7 { fill: #868887 } - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + @@ -138,38 +138,38 @@ - + - - $ nf-core list rna rna-seq - -                                          ,--./,-. -          ___     __   __   __   ___     /,-._.--~\ -    |\ | |__  __ /  ` /  \ |__) |__         }  { -    | \| |       \__, \__/ |  \ |___     \`-._,-`-, -                                          `._,._,' - -    nf-core/tools version 2.14.1 - https://nf-co.re - - -┏━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━┳━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━┓ -┃┃┃┃┃┃Have latest        ┃ -┃Pipeline Name      ┃Stars┃Latest Release┃     Released┃Last Pulled┃release?           ┃ -┡━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━╇━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━┩ -│ differentialabunda… │    45 │          1.5.0 │  23 hours ago │           - │ -                   │ -│ smrnaseq            │    68 │          2.3.1 │   3 weeks ago │           - │ -                   │ -│ rnaseq              │   785 │         3.14.0 │  4 months ago │           - │ -                   │ -│ spatialvi           │    39 │            dev │    3 days ago │           - │ -                   │ -│ scnanoseq           │     5 │            dev │   1 weeks ago │           - │ -                   │ -│ scrnaseq            │   169 │          2.6.0 │     yesterday │           - │ -                   │ -│ circrna             │    40 │            dev │   2 weeks ago │           - │ -                   │ -│ rnafusion           │   129 │          3.0.2 │   4 weeks ago │           - │ -                   │ -│ rnasplice           │    33 │          1.0.3 │  2 months ago │           - │ -                   │ -│ dualrnaseq          │    16 │          1.0.0 │   3 years ago │           - │ -                   │ -│ marsseq             │     5 │          1.0.3 │ 10 months ago │           - │ -                   │ -│ lncpipe             │    30 │            dev │   2 years ago │           - │ -                   │ -│ scflow              │    24 │            dev │   3 years ago │           - │ -                   │ -└─────────────────────┴───────┴────────────────┴───────────────┴─────────────┴─────────────────────┘ + + $ nf-core list rna rna-seq + +                                          ,--./,-. +          ___     __   __   __   ___     /,-._.--~\ +    |\ | |__  __ /  ` /  \ |__) |__         }  { +    | \| |       \__, \__/ |  \ |___     \`-._,-`-, +                                          `._,._,' + +    nf-core/tools version 2.14.1 - https://nf-co.re + + +┏━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━┳━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━┓ +┃┃┃┃┃┃Have latest        ┃ +┃Pipeline Name      ┃Stars┃Latest Release┃     Released┃Last Pulled┃release?           ┃ +┡━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━╇━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━┩ +│ differentialabunda… │    45 │          1.5.0 │     yesterday │           - │ -                   │ +│ smrnaseq            │    68 │          2.3.1 │   3 weeks ago │           - │ -                   │ +│ rnaseq              │   785 │         3.14.0 │  4 months ago │           - │ -                   │ +│ spatialvi           │    39 │            dev │    3 days ago │           - │ -                   │ +│ scnanoseq           │     5 │            dev │   1 weeks ago │           - │ -                   │ +│ scrnaseq            │   169 │          2.6.0 │     yesterday │           - │ -                   │ +│ circrna             │    40 │            dev │   2 weeks ago │           - │ -                   │ +│ rnafusion           │   129 │          3.0.2 │   4 weeks ago │           - │ -                   │ +│ rnasplice           │    33 │          1.0.3 │  2 months ago │           - │ -                   │ +│ dualrnaseq          │    16 │          1.0.0 │   3 years ago │           - │ -                   │ +│ marsseq             │     5 │          1.0.3 │ 10 months ago │           - │ -                   │ +│ lncpipe             │    30 │            dev │   2 years ago │           - │ -                   │ +│ scflow              │    24 │            dev │   3 years ago │           - │ -                   │ +└─────────────────────┴───────┴────────────────┴───────────────┴─────────────┴─────────────────────┘ diff --git a/docs/images/nf-core-list.svg b/docs/images/nf-core-list.svg index 30f18fd4a8..32680c6142 100644 --- a/docs/images/nf-core-list.svg +++ b/docs/images/nf-core-list.svg @@ -19,91 +19,91 @@ font-weight: 700; } - .terminal-3232730302-matrix { + .terminal-187731172-matrix { font-family: Fira Code, monospace; font-size: 20px; line-height: 24.4px; font-variant-east-asian: full-width; } - .terminal-3232730302-title { + .terminal-187731172-title { font-size: 18px; font-weight: bold; font-family: arial; } - .terminal-3232730302-r1 { fill: #c5c8c6 } -.terminal-3232730302-r2 { fill: #98a84b } -.terminal-3232730302-r3 { fill: #9a9b99 } -.terminal-3232730302-r4 { fill: #608ab1 } -.terminal-3232730302-r5 { fill: #d0b344 } -.terminal-3232730302-r6 { fill: #c5c8c6;font-weight: bold } -.terminal-3232730302-r7 { fill: #868887 } -.terminal-3232730302-r8 { fill: #868887;font-style: italic; } + .terminal-187731172-r1 { fill: #c5c8c6 } +.terminal-187731172-r2 { fill: #98a84b } +.terminal-187731172-r3 { fill: #9a9b99 } +.terminal-187731172-r4 { fill: #608ab1 } +.terminal-187731172-r5 { fill: #d0b344 } +.terminal-187731172-r6 { fill: #c5c8c6;font-weight: bold } +.terminal-187731172-r7 { fill: #868887 } +.terminal-187731172-r8 { fill: #868887;font-style: italic; } - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + @@ -115,30 +115,30 @@ - + - - $ nf-core list - -                                          ,--./,-. -          ___     __   __   __   ___     /,-._.--~\ -    |\ | |__  __ /  ` /  \ |__) |__         }  { -    | \| |       \__, \__/ |  \ |___     \`-._,-`-, -                                          `._,._,' - -    nf-core/tools version 2.14.1 - https://nf-co.re - - -┏━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━┳━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━┓ -┃┃┃┃┃┃Have latest        ┃ -┃Pipeline Name      ┃Stars┃Latest Release┃     Released┃Last Pulled┃release?           ┃ -┡━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━╇━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━┩ -│ oncoanalyser        │    14 │            dev │  10 hours ago │           - │ -                   │ -│ metapep             │     6 │            dev │  19 hours ago │           - │ -                   │ -│ reportho            │     1 │            dev │     yesterday │           - │ -                   │ -│ differentialabunda… │    45 │          1.5.0 │  23 hours ago │           - │ -                   │ -│ smrnaseq            │    68 │          2.3.1 │   3 weeks ago │           - │ -                   │ -[..truncated..] + + $ nf-core list + +                                          ,--./,-. +          ___     __   __   __   ___     /,-._.--~\ +    |\ | |__  __ /  ` /  \ |__) |__         }  { +    | \| |       \__, \__/ |  \ |___     \`-._,-`-, +                                          `._,._,' + +    nf-core/tools version 2.14.1 - https://nf-co.re + + +┏━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━┳━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━┓ +┃┃┃┃┃┃Have latest        ┃ +┃Pipeline Name      ┃Stars┃Latest Release┃     Released┃Last Pulled┃release?           ┃ +┡━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━╇━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━┩ +│ oncoanalyser        │    14 │            dev │  11 hours ago │           - │ -                   │ +│ metapep             │     6 │            dev │  20 hours ago │           - │ -                   │ +│ reportho            │     1 │            dev │     yesterday │           - │ -                   │ +│ differentialabunda… │    45 │          1.5.0 │     yesterday │           - │ -                   │ +│ smrnaseq            │    68 │          2.3.1 │   3 weeks ago │           - │ -                   │ +[..truncated..] diff --git a/docs/images/nf-core-modules-lint.svg b/docs/images/nf-core-modules-lint.svg index a3f2097ce5..692069b4f6 100644 --- a/docs/images/nf-core-modules-lint.svg +++ b/docs/images/nf-core-modules-lint.svg @@ -1,4 +1,4 @@ - + - - + + - + - + - + - + - + - + - + - + - + - + - + - + - + - - - - - - - - - - - - - - - - - - - - - - - - - + - + - - $ nf-core modules lint multiqc - -                                          ,--./,-. -          ___     __   __   __   ___     /,-._.--~\ -    |\ | |__  __ /  ` /  \ |__) |__         }  { -    | \| |       \__, \__/ |  \ |___     \`-._,-`-, -                                          `._,._,' - -    nf-core/tools version 2.14.1 - https://nf-co.re - - - -INFO     Linting modules repo: '.' -INFO     Linting module: 'multiqc' - -╭───────────────────────╮ -│LINT RESULTS SUMMARY│ -├───────────────────────┤ -│[✔]  60 Tests Passed │ -│[!]   0 Test Warnings│ -│[✗]   0 Tests Failed │ -╰───────────────────────╯ + + $ nf-core modules lint multiqc + +                                          ,--./,-. +          ___     __   __   __   ___     /,-._.--~\ +    |\ | |__  __ /  ` /  \ |__) |__         }  { +    | \| |       \__, \__/ |  \ |___     \`-._,-`-, +                                          `._,._,' + +    nf-core/tools version 2.14.1 - https://nf-co.re + + + +INFO     Linting modules repo: '.' +INFO     Linting module: 'multiqc' diff --git a/docs/images/nf-core-subworkflows-create.svg b/docs/images/nf-core-subworkflows-create.svg index ef84aff2a3..ddf50e89fd 100644 --- a/docs/images/nf-core-subworkflows-create.svg +++ b/docs/images/nf-core-subworkflows-create.svg @@ -1,4 +1,4 @@ - + - - + + - + - + - + - + - + - + - + - + - + - + - + - + + + + + + + + + + + + + + + + + + + + + + + + + - + - + - - $ nf-core subworkflows create bam_stats_samtools --author @nf-core-bot --force - -                                          ,--./,-. -          ___     __   __   __   ___     /,-._.--~\ -    |\ | |__  __ /  ` /  \ |__) |__         }  { -    | \| |       \__, \__/ |  \ |___     \`-._,-`-, -                                          `._,._,' - -    nf-core/tools version 2.14.1 - https://nf-co.re - - - -ERROR    Branch 'master' not found in 'https://github.com/nf-core/modules.git' + + $ nf-core subworkflows create bam_stats_samtools --author @nf-core-bot --force + +                                          ,--./,-. +          ___     __   __   __   ___     /,-._.--~\ +    |\ | |__  __ /  ` /  \ |__) |__         }  { +    | \| |       \__, \__/ |  \ |___     \`-._,-`-, +                                          `._,._,' + +    nf-core/tools version 2.14.1 - https://nf-co.re + + + +INFO     Repository type: modules +INFO    Press enter to use default values (shown in brackets)or type your own responses.  +ctrl+click underlined text to open links. +INFO     Created component template: 'bam_stats_samtools' +INFO     Created following files:                                                                    +           subworkflows/nf-core/bam_stats_samtools/main.nf                                           +           subworkflows/nf-core/bam_stats_samtools/meta.yml                                          +           subworkflows/nf-core/bam_stats_samtools/tests/tags.yml                                    +           subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test                                diff --git a/docs/images/nf-core-subworkflows-lint.svg b/docs/images/nf-core-subworkflows-lint.svg index 9f18f994be..08135d4e7c 100644 --- a/docs/images/nf-core-subworkflows-lint.svg +++ b/docs/images/nf-core-subworkflows-lint.svg @@ -1,4 +1,4 @@ - + - - + + - + - + - + - + - + - + - + - + - + - + - + - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - + - - - - $ nf-core subworkflows lint bam_stats_samtools - -                                          ,--./,-. -          ___     __   __   __   ___     /,-._.--~\ -    |\ | |__  __ /  ` /  \ |__) |__         }  { -    | \| |       \__, \__/ |  \ |___     \`-._,-`-, -                                          `._,._,' - -    nf-core/tools version 2.14.1 - https://nf-co.re - - - -CRITICAL Branch 'master' not found in 'https://github.com/nf-core/modules.git' + + + + $ nf-core subworkflows lint bam_stats_samtools + +                                          ,--./,-. +          ___     __   __   __   ___     /,-._.--~\ +    |\ | |__  __ /  ` /  \ |__) |__         }  { +    | \| |       \__, \__/ |  \ |___     \`-._,-`-, +                                          `._,._,' + +    nf-core/tools version 2.14.1 - https://nf-co.re + + + +INFO     Linting modules repo: '.' +INFO     Linting subworkflow: 'bam_stats_samtools' + +╭─[!] 15 Subworkflow Test Warnings───────────────────────────────────────────────────────────────╮ +│                     ╷                                     ╷                                      │ +│Subworkflow name   │File path                          │Test message                        │ +│╶────────────────────┼─────────────────────────────────────┼─────────────────────────────────────╴│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in main.nf.test: //Add │ +│││all required assertions to verify │ +│││the test output.│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in main.nf.test: Add │ +│││tags for all modules used within │ +│││this subworkflow. Example:│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in main.nf.test: Change │ +│││the test name preferably indicating │ +│││the test-data and file-format used│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in main.nf.test: Once │ +│││you have added the required tests, │ +│││please run the following command to │ +│││build this file:│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in main.nf.test: define │ +│││inputs of the workflow here. │ +│││Example:│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in main.nf: A │ +│││subworkflow SHOULD import at least │ +│││two modules│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in main.nf: If in doubt │ +│││look at other nf-core/subworkflows │ +│││to see how we are doing things! :)│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in main.nf: edit emitted│ +│││channels│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in main.nf: edit input │ +│││(take) channels│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in main.nf: substitute │ +│││modules here for the modules of your│ +│││subworkflow│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in meta.yml: #Add a │ +│││description of the subworkflow and │ +│││list keywords│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in meta.yml: #Add a list│ +│││of the modules and/or subworkflows │ +│││used in the subworkflow│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in meta.yml: #List all │ +│││of the channels used as input with a│ +│││description and their structure│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│TODO string in meta.yml: #List all │ +│││of the channels used as output with │ +│││a descriptions and their structure│ +│bam_stats_samtools │subworkflows/nf-core/bam_stats_sam…│versions not found in snapshot file │ +│                     ╵                                     ╵                                      │ +╰──────────────────────────────────────────────────────────────────────────────────────────────────╯ +╭───────────────────────╮ +│LINT RESULTS SUMMARY│ +├───────────────────────┤ +│[✔]  42 Tests Passed │ +│[!]  15 Test Warnings│ +│[✗]   0 Tests Failed │ +╰───────────────────────╯ diff --git a/docs/images/nf-core-subworkflows-remove.svg b/docs/images/nf-core-subworkflows-remove.svg index 462540e906..9da9135085 100644 --- a/docs/images/nf-core-subworkflows-remove.svg +++ b/docs/images/nf-core-subworkflows-remove.svg @@ -1,4 +1,4 @@ - + - - + + - + - + - + - + - + - + - + - + - + - + - + - + + + + + + + + + + + + + + + + + + + - + - - - - $ nf-core subworkflows remove bam_rseqc - -                                          ,--./,-. -          ___     __   __   __   ___     /,-._.--~\ -    |\ | |__  __ /  ` /  \ |__) |__         }  { -    | \| |       \__, \__/ |  \ |___     \`-._,-`-, -                                          `._,._,' - -    nf-core/tools version 2.14.1 - https://nf-co.re - - - -CRITICAL Branch 'master' not found in 'https://github.com/nf-core/modules.git' + + + + $ nf-core subworkflows remove bam_rseqc + +                                          ,--./,-. +          ___     __   __   __   ___     /,-._.--~\ +    |\ | |__  __ /  ` /  \ |__) |__         }  { +    | \| |       \__, \__/ |  \ |___     \`-._,-`-, +                                          `._,._,' + +    nf-core/tools version 2.14.1 - https://nf-co.re + + + +INFO     Removed files for 'rseqc/bamstat' and its dependencies 'rseqc/bamstat'.                     +INFO     Removed files for 'rseqc/inferexperiment' and its dependencies 'rseqc/inferexperiment'.     +INFO     Removed files for 'rseqc/innerdistance' and its dependencies 'rseqc/innerdistance'.         +INFO     Removed files for 'rseqc/junctionannotation' and its dependencies                           +'rseqc/junctionannotation'.                                                                 +INFO     Removed files for 'bam_rseqc' and its dependencies 'bam_rseqc, rseqc_bamstat,  +rseqc_inferexperiment, rseqc_innerdistance, rseqc_junctionannotation'.                      diff --git a/docs/images/nf-core-subworkflows-test.svg b/docs/images/nf-core-subworkflows-test.svg index 842cecebeb..cbd67278ad 100644 --- a/docs/images/nf-core-subworkflows-test.svg +++ b/docs/images/nf-core-subworkflows-test.svg @@ -19,65 +19,64 @@ font-weight: 700; } - .terminal-3721937368-matrix { + .terminal-1798304874-matrix { font-family: Fira Code, monospace; font-size: 20px; line-height: 24.4px; font-variant-east-asian: full-width; } - .terminal-3721937368-title { + .terminal-1798304874-title { font-size: 18px; font-weight: bold; font-family: arial; } - .terminal-3721937368-r1 { fill: #c5c8c6 } -.terminal-3721937368-r2 { fill: #98a84b } -.terminal-3721937368-r3 { fill: #9a9b99 } -.terminal-3721937368-r4 { fill: #608ab1 } -.terminal-3721937368-r5 { fill: #d0b344 } -.terminal-3721937368-r6 { fill: #292929;font-weight: bold } + .terminal-1798304874-r1 { fill: #c5c8c6 } +.terminal-1798304874-r2 { fill: #98a84b } +.terminal-1798304874-r3 { fill: #9a9b99 } +.terminal-1798304874-r4 { fill: #608ab1 } +.terminal-1798304874-r5 { fill: #d0b344 } - + - + - + - + - + - + - + - + - + - + - + - + - + @@ -89,22 +88,22 @@ - - - - $ nf-core subworkflows test bam_rseqc --no-prompts - -                                          ,--./,-. -          ___     __   __   __   ___     /,-._.--~\ -    |\ | |__  __ /  ` /  \ |__) |__         }  { -    | \| |       \__, \__/ |  \ |___     \`-._,-`-, -                                          `._,._,' - -    nf-core/tools version 2.14.1 - https://nf-co.re - - - -CRITICAL Branch 'master' not found in 'https://github.com/nf-core/modules.git' + + + + $ nf-core subworkflows test bam_rseqc --no-prompts + +                                          ,--./,-. +          ___     __   __   __   ___     /,-._.--~\ +    |\ | |__  __ /  ` /  \ |__) |__         }  { +    | \| |       \__, \__/ |  \ |___     \`-._,-`-, +                                          `._,._,' + +    nf-core/tools version 2.14.1 - https://nf-co.re + + + +INFO     Generating nf-test snapshot                                                                 diff --git a/docs/images/nf-core-subworkflows-update.svg b/docs/images/nf-core-subworkflows-update.svg index a581cd18cf..d6da3d97ab 100644 --- a/docs/images/nf-core-subworkflows-update.svg +++ b/docs/images/nf-core-subworkflows-update.svg @@ -19,65 +19,65 @@ font-weight: 700; } - .terminal-2384935656-matrix { + .terminal-833557645-matrix { font-family: Fira Code, monospace; font-size: 20px; line-height: 24.4px; font-variant-east-asian: full-width; } - .terminal-2384935656-title { + .terminal-833557645-title { font-size: 18px; font-weight: bold; font-family: arial; } - .terminal-2384935656-r1 { fill: #c5c8c6 } -.terminal-2384935656-r2 { fill: #98a84b } -.terminal-2384935656-r3 { fill: #9a9b99 } -.terminal-2384935656-r4 { fill: #608ab1 } -.terminal-2384935656-r5 { fill: #d0b344 } -.terminal-2384935656-r6 { fill: #cc555a;font-weight: bold } + .terminal-833557645-r1 { fill: #c5c8c6 } +.terminal-833557645-r2 { fill: #98a84b } +.terminal-833557645-r3 { fill: #9a9b99 } +.terminal-833557645-r4 { fill: #608ab1 } +.terminal-833557645-r5 { fill: #d0b344 } +.terminal-833557645-r6 { fill: #cc555a;font-weight: bold } - + - + - + - + - + - + - + - + - + - + - + - + - + @@ -89,22 +89,22 @@ - + - - $ nf-core subworkflows update --all --no-preview - -                                          ,--./,-. -          ___     __   __   __   ___     /,-._.--~\ -    |\ | |__  __ /  ` /  \ |__) |__         }  { -    | \| |       \__, \__/ |  \ |___     \`-._,-`-, -                                          `._,._,' - -    nf-core/tools version 2.14.1 - https://nf-co.re - - - -ERROR    Branch 'master' not found in 'https://github.com/nf-core/modules.git' + + $ nf-core subworkflows update --all --no-preview + +                                          ,--./,-. +          ___     __   __   __   ___     /,-._.--~\ +    |\ | |__  __ /  ` /  \ |__) |__         }  { +    | \| |       \__, \__/ |  \ |___     \`-._,-`-, +                                          `._,._,' + +    nf-core/tools version 2.14.1 - https://nf-co.re + + + +ERROR   'rseqc/junctionsaturation'