diff --git a/modules/local/peaks/stare.nf b/modules/local/peaks/stare.nf index dc47cb2..68b8fd5 100644 --- a/modules/local/peaks/stare.nf +++ b/modules/local/peaks/stare.nf @@ -3,7 +3,9 @@ process STARE { label 'process_high' conda "bioconda::stare-abc" - container "biocontainers/stare-abc:1.0.4--haf6292c_1" + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://depot.galaxyproject.org/singularity/stare-abc:1.0.4--haf6292c_1' : + 'biocontainers/stare-abc:1.0.4--haf6292c_1' }" input: tuple val(meta), path(candidate_regions)