From 648a3b4770f0677dcccbd2d908cbdec28b5bdab3 Mon Sep 17 00:00:00 2001
From: Nico Trummer <nictru32@gmail.com>
Date: Wed, 16 Oct 2024 14:35:50 +0200
Subject: [PATCH] Fix problematic json schemas

---
 assets/schema_counts_design.json | 21 +++++++++++++++------
 assets/schema_input_bam.json     | 24 ++++++++++++++++++------
 2 files changed, 33 insertions(+), 12 deletions(-)

diff --git a/assets/schema_counts_design.json b/assets/schema_counts_design.json
index 6d656f3..917a9f5 100644
--- a/assets/schema_counts_design.json
+++ b/assets/schema_counts_design.json
@@ -1,5 +1,5 @@
 {
-    "$schema": "http://json-schema.org/draft-07/schema",
+    "$schema": "http://json-schema.org/draft/2020-12/schema",
     "$id": "https://raw.githubusercontent.com/nf-core/tfactivity/master/assets/schema_counts_design.json",
     "title": "nf-core/tfactivity pipeline - params.counts_design schema",
     "description": "Schema for the file provided with params.counts_design",
@@ -11,19 +11,25 @@
                 "type": "string",
                 "pattern": "^\\S+$",
                 "errorMessage": "Sample name must be provided and cannot contain spaces",
-                "meta": ["id"]
+                "meta": [
+                    "id"
+                ]
             },
             "condition": {
                 "type": "string",
                 "pattern": "^\\S+$",
                 "errorMessage": "Condition name must be provided and cannot contain spaces",
-                "meta": ["condition"]
+                "meta": [
+                    "condition"
+                ]
             },
             "batch": {
                 "type": "string",
                 "pattern": "^\\S+$",
                 "errorMessage": "Batch identifier cannot contain spaces",
-                "meta": ["batch"]
+                "meta": [
+                    "batch"
+                ]
             },
             "counts_file": {
                 "type": "string",
@@ -33,6 +39,9 @@
                 "errorMessage": "Counts file must be a .csv or .txt file"
             }
         },
-        "required": ["sample", "condition"]
+        "required": [
+            "sample",
+            "condition"
+        ]
     }
-}
+}
\ No newline at end of file
diff --git a/assets/schema_input_bam.json b/assets/schema_input_bam.json
index 5661c81..101cd3c 100644
--- a/assets/schema_input_bam.json
+++ b/assets/schema_input_bam.json
@@ -1,5 +1,5 @@
 {
-    "$schema": "http://json-schema.org/draft-07/schema",
+    "$schema": "http://json-schema.org/draft/2020-12/schema",
     "$id": "https://raw.githubusercontent.com/nf-core/tfactivity/master/assets/schema_input.json",
     "title": "nf-core/tfactivity pipeline - params.input schema",
     "description": "Schema for the file provided with params.input_bam",
@@ -11,19 +11,25 @@
                 "type": "string",
                 "pattern": "^\\S+$",
                 "errorMessage": "Sample name must be provided and cannot contain spaces",
-                "meta": ["id"]
+                "meta": [
+                    "id"
+                ]
             },
             "condition": {
                 "type": "string",
                 "pattern": "^\\S+$",
                 "errorMessage": "Condition name must be provided and cannot contain spaces",
-                "meta": ["condition"]
+                "meta": [
+                    "condition"
+                ]
             },
             "assay": {
                 "type": "string",
                 "pattern": "^\\S+$",
                 "errorMessage": "Assay name must be provided and cannot contain spaces",
-                "meta": ["assay"]
+                "meta": [
+                    "assay"
+                ]
             },
             "signal": {
                 "type": "string",
@@ -40,6 +46,12 @@
                 "errorMessage": "Control file must be provided and must be a .bam file"
             }
         },
-        "required": ["sample", "condition", "assay", "signal", "control"]
+        "required": [
+            "sample",
+            "condition",
+            "assay",
+            "signal",
+            "control"
+        ]
     }
-}
+}
\ No newline at end of file