diff --git a/subworkflows/local/contaminant_filter.nf b/subworkflows/local/contaminant_filter.nf index 19ce7bea..383c85ad 100644 --- a/subworkflows/local/contaminant_filter.nf +++ b/subworkflows/local/contaminant_filter.nf @@ -74,7 +74,7 @@ workflow CONTAMINANT_FILTER { ch_versions = ch_versions.mix(BLAT_CDNA.out.versions) INDEX_CDNA ( BLAT_CDNA.out.filtered_set ) ch_versions = ch_versions.mix(INDEX_CDNA.out.versions) - MAP_CDNA ( trna_reads, INDEX_CDNA.out.index, 'cDNA' ) + MAP_CDNA ( trna_reads, INDEX_CDNA.out.index, 'cDNA' ) ch_versions = ch_versions.mix(MAP_CDNA.out.versions) ch_filter_stats = ch_filter_stats.mix(MAP_CDNA.out.stats.ifEmpty(null)) MAP_CDNA.out.unmapped.set { cdna_reads } @@ -100,7 +100,7 @@ workflow CONTAMINANT_FILTER { ch_versions = ch_versions.mix(BLAT_PIRNA.out.versions) INDEX_PIRNA ( BLAT_PIRNA.out.filtered_set ) ch_versions = ch_versions.mix(INDEX_PIRNA.out.versions) - MAP_PIRNA (ncrna_reads, INDEX_PIRNA.out.index, 'piRNA' ) + MAP_PIRNA ( ncrna_reads, INDEX_PIRNA.out.index, 'piRNA' ) ch_versions = ch_versions.mix(MAP_PIRNA.out.versions) ch_filter_stats = ch_filter_stats.mix(MAP_PIRNA.out.stats.ifEmpty(null)) MAP_PIRNA.out.unmapped.set { pirna_reads } @@ -113,7 +113,7 @@ workflow CONTAMINANT_FILTER { ch_versions = ch_versions.mix(BLAT_OTHER.out.versions) INDEX_OTHER ( BLAT_OTHER.out.filtered_set ) ch_versions = ch_versions.mix(INDEX_OTHER.out.versions) - MAP_OTHER (ncrna_reads, INDEX_OTHER.out.index, 'other' ) + MAP_OTHER ( ncrna_reads, INDEX_OTHER.out.index, 'other' ) ch_versions = ch_versions.mix(MAP_OTHER.out.versions) ch_filter_stats = ch_filter_stats.mix(MAP_OTHER.out.stats.ifEmpty(null)) MAP_OTHER.out.unmapped.set { other_cont_reads }