From 019487bd268dd3c870b15b80f92043c0a43f09c7 Mon Sep 17 00:00:00 2001
From: Alexander Peltzer <alex.peltzer@gmail.com>
Date: Sun, 13 Oct 2024 09:57:31 +0000
Subject: [PATCH] Update modules

---
 modules.json | 28 ++++++++++++----------------
 1 file changed, 12 insertions(+), 16 deletions(-)

diff --git a/modules.json b/modules.json
index 30c64e02..6f19df08 100644
--- a/modules.json
+++ b/modules.json
@@ -8,8 +8,7 @@
                     "bioawk": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": ["modules"],
-                        "patch": "modules/nf-core/bioawk/bioawk.diff"
+                        "installed_by": ["modules"]
                     },
                     "blat": {
                         "branch": "master",
@@ -49,7 +48,7 @@
                     "fastp": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
+                        "installed_by": ["fastq_fastqc_umitools_fastp"]
                     },
                     "fastqc": {
                         "branch": "master",
@@ -104,27 +103,27 @@
                     "samtools/flagstat": {
                         "branch": "master",
                         "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
-                        "installed_by": ["bam_stats_samtools", "modules"]
+                        "installed_by": ["bam_stats_samtools"]
                     },
                     "samtools/idxstats": {
                         "branch": "master",
                         "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
-                        "installed_by": ["bam_stats_samtools", "modules"]
+                        "installed_by": ["bam_stats_samtools"]
                     },
                     "samtools/index": {
                         "branch": "master",
                         "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
-                        "installed_by": ["bam_sort_stats_samtools", "modules"]
+                        "installed_by": ["bam_sort_stats_samtools"]
                     },
                     "samtools/sort": {
                         "branch": "master",
                         "git_sha": "b7800db9b069ed505db3f9d91b8c72faea9be17b",
-                        "installed_by": ["bam_sort_stats_samtools", "modules"]
+                        "installed_by": ["bam_sort_stats_samtools"]
                     },
                     "samtools/stats": {
                         "branch": "master",
                         "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
-                        "installed_by": ["bam_stats_samtools", "modules"]
+                        "installed_by": ["bam_stats_samtools"]
                     },
                     "seqcluster/collapse": {
                         "branch": "master",
@@ -139,8 +138,7 @@
                     "seqkit/grep": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": ["modules"],
-                        "patch": "modules/nf-core/seqkit/grep/seqkit-grep.diff"
+                        "installed_by": ["modules"]
                     },
                     "seqkit/replace": {
                         "branch": "master",
@@ -155,7 +153,7 @@
                     "umitools/extract": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
+                        "installed_by": ["fastq_fastqc_umitools_fastp"]
                     },
                     "untar": {
                         "branch": "master",
@@ -202,11 +200,9 @@
                         "installed_by": ["subworkflows"]
                     },
                     "utils_nfschema_plugin": {
-                        "utils_nfschema_plugin": {
-                            "branch": "master",
-                            "git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
-                            "installed_by": ["subworkflows"]
-                        }
+                        "branch": "master",
+                        "git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
+                        "installed_by": ["subworkflows"]
                     }
                 }
             }