From a74de9edb80a50e0625fda7ff3b1580fea480f7f Mon Sep 17 00:00:00 2001 From: heylf Date: Sun, 3 Dec 2023 16:41:33 +0100 Subject: [PATCH] Update docs/usage.md Co-authored-by: Gregor Sturm --- docs/usage.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docs/usage.md b/docs/usage.md index 9b37ee6f..c9e96eb0 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -123,11 +123,13 @@ If you are using cellranger-arc you have to add the column _sample_type_ (atac f An example samplesheet for a dataset called test_scARC that has two sequencing runs for the scATAC and one seqeuncing run from two lanes for the scRNA could look like this: +```csv sample,fastq_1,fastq_2,fastq_barcode,sample_type test_scARC,path/test_scARC_atac_rep1_S1_L001_R1_001.fastq.gz,path/test_scARC_atac_rep1_S1_L001_R2_001.fastq.gz,path/test_scARC_atac_rep1_S1_L001_I2_001.fastq.gz,atac test_scARC,path/test_scARC_atac_rep2_S2_L001_R1_001.fastq.gz,path/test_scARC_atac_rep2_S2_L001_R2_001.fastq.gz,path/test_scARC_atac_rep2_S2_L001_I2_001.fastq.gz,atac test_scARC,path/test_scARC_gex_S1_L001_R1_001.fastq.gz,path/test_scARC_gex_S1_L001_R2_001.fastq.gz,,gex test_scARC,path/test_scARC_gex_S1_L002_R1_001.fastq.gz,path/test_scARC_gex_S1_L002_R2_001.fastq.gz,,gex +``` #### Config file and index