From 84f781d4665b27c8bda2ffb28b872af8878b8af4 Mon Sep 17 00:00:00 2001 From: fmalmeida Date: Mon, 25 Mar 2024 12:20:52 +0100 Subject: [PATCH] update comment line --- modules/local/mtx_to_h5ad.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/local/mtx_to_h5ad.nf b/modules/local/mtx_to_h5ad.nf index e5b95585..61e06e91 100644 --- a/modules/local/mtx_to_h5ad.nf +++ b/modules/local/mtx_to_h5ad.nf @@ -27,7 +27,7 @@ process MTX_TO_H5AD { // check input type of inputs input_type = (input_to_check.toUriString().contains('unfiltered') || input_to_check.toUriString().contains('raw')) ? 'raw' : 'filtered' - if ( params.aligner == 'alevin' ) { input_type = 'raw' } // alevin has its own filtering methods and mostly output a single mtx, raw here means, the base tool output + if ( params.aligner == 'alevin' ) { input_type = 'raw' } // alevin has its own filtering methods and mostly output a single mtx, 'raw' here means, the base tool output if (input_to_check.toUriString().contains('emptydrops')) { input_type = 'custom_emptydrops_filter' } // def file paths for aligners. Cellranger is normally converted with the .h5 files