From 1c478e01b7350d171a215bb730ee4ad43ddda2c8 Mon Sep 17 00:00:00 2001 From: Till Englert Date: Mon, 16 Oct 2023 14:48:38 +0200 Subject: [PATCH 1/3] Forgot to add test_all to nextflow.config --- nextflow.config | 1 + 1 file changed, 1 insertion(+) diff --git a/nextflow.config b/nextflow.config index 2b9669cf..d5c61927 100644 --- a/nextflow.config +++ b/nextflow.config @@ -201,6 +201,7 @@ profiles { test_mhcflurry { includeConfig 'conf/test_mhcflurry.config' } test_mhcnuggets_1 { includeConfig 'conf/test_mhcnuggets_1.config' } test_mhcnuggets_2 { includeConfig 'conf/test_mhcnuggets_2.config' } + test_all { includeConfig 'conf/test_all.config' } } // Set default registry for Apptainer, Docker, Podman and Singularity independent of -profile From defbdba4c9413507812102e5c8c3258c17436a00 Mon Sep 17 00:00:00 2001 From: Till Englert Date: Mon, 16 Oct 2023 14:50:44 +0200 Subject: [PATCH 2/3] Update Changelog --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 787b1255..7b944fac 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -40,7 +40,7 @@ Pipeline has been re-implemented in [Nextflow DSL2](https://www.nextflow.io/docs - [#91](https://github.com/nf-core/metapep/pull/91) - Added new parameter to allow all input peptide lengths to be predicted, and also necessary checks to circumvent errors during predictions - [#94](https://github.com/nf-core/metapep/pull/94) - Updated workflow overview figure - [#96](https://github.com/nf-core/metapep/pull/96) - Rework of chunk sizes and adjusting and creating the corresponding parameters (`--prediction_chunk_size`, `--pred_chunk_size_scaling`, `--downstream_chunk_size`, `--pred_buffer_files`) to optimise the number and size of jobs for large datasets -- [#93](https://github.com/nf-core/metapep/pull/93) - Added new tests and replaced tests to have a broader test landscape +- [#93](https://github.com/nf-core/metapep/pull/93), [#98](https://github.com/nf-core/metapep/pull/98) - Added new tests and replaced tests to have a broader test landscape ### `Fixed` From 07b5974b2e19584234a3cb8f26e9aaeb45a3e200 Mon Sep 17 00:00:00 2001 From: Till Englert Date: Mon, 16 Oct 2023 14:54:32 +0200 Subject: [PATCH 3/3] Remove test_bins and test_tiny --- nextflow.config | 2 -- 1 file changed, 2 deletions(-) diff --git a/nextflow.config b/nextflow.config index d5c61927..0233e934 100644 --- a/nextflow.config +++ b/nextflow.config @@ -189,11 +189,9 @@ profiles { } test { includeConfig 'conf/test.config' } test_mouse { includeConfig 'conf/test_mouse.config' } - test_tiny { includeConfig 'conf/test_tiny.config' } test_assembly_only { includeConfig 'conf/test_assembly_only.config' } test_taxa_only { includeConfig 'conf/test_taxa_only.config' } test_bins_only { includeConfig 'conf/test_bins_only.config' } - test_bins { includeConfig 'conf/test_bins.config' } test_coassembly { includeConfig 'conf/test_coassembly.config' } test_full { includeConfig 'conf/test_full.config' } test_model_information { includeConfig 'conf/test_model_information.config' }