diff --git a/ingest/bin/infer-dengue-serotype.py b/ingest/bin/infer-dengue-serotype.py index b24812a2..6d9cde23 100755 --- a/ingest/bin/infer-dengue-serotype.py +++ b/ingest/bin/infer-dengue-serotype.py @@ -24,7 +24,7 @@ def parse_args(): return parser.parse_args() -def _set_dengue_serotype(record, col="virus_tax_id"): +def _get_dengue_serotype(record, col="virus_tax_id"): """Set dengue serotype from virus_tax_id""" dengue_types = { "11053": "denv1", @@ -44,7 +44,7 @@ def main(): for record in stdin: record = json.loads(record) - record[args.out_col] = _set_dengue_serotype(record, col=args.virus_tax_id) + record[args.out_col] = _get_dengue_serotype(record, col=args.virus_tax_id) stdout.write(json.dumps(record) + "\n")