Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update nextflow install path #5198

Open
wants to merge 6 commits into
base: master
Choose a base branch
from

Conversation

christopher-hakkaart
Copy link
Contributor

  • Update nextflow install path
  • Update NXF_VER example

Signed-off-by: christopher-hakkaart <[email protected]>
Copy link

netlify bot commented Aug 2, 2024

Deploy Preview for nextflow-docs-staging ready!

Name Link
🔨 Latest commit f987a32
🔍 Latest deploy log https://app.netlify.com/sites/nextflow-docs-staging/deploys/66d962490765060008cd4c76
😎 Deploy Preview https://deploy-preview-5198--nextflow-docs-staging.netlify.app
📱 Preview on mobile
Toggle QR Code...

QR Code

Use your smartphone camera to open QR code link.

To edit notification comments on pull requests, go to your Netlify site configuration.

Signed-off-by: christopher-hakkaart <[email protected]>

```bash
sudo mv nextflow /usr/local/bin
mv nextflow $HOME/.local/bin/
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Not sure about this, because $HOME/.local/bin is not a standard path. Mac does not have it (not sure across different linux distribution).

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Good point - it would be nice to have a suggested path rather than saying "Install on your path". Do you have any suggestions?

Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

maybe it can be fixed adding mkdir -p $HOME/.local/bin/ before mv

and changing the tip something like:

make sure the directory $HOME/.local/bin/ is in your PATH variable, otherwise .. (how to do it). Alternatively you can use any other directory already in your path. Be aware nextflow will try to override this file when upgrading it, etc ..

@christopher-hakkaart christopher-hakkaart marked this pull request as ready for review September 5, 2024 10:50
@christopher-hakkaart christopher-hakkaart requested a review from a team as a code owner September 5, 2024 10:50
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants