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how to use PUG? #3
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Do you have any other information? Other outputs or errors? |
Hi,McKain. #1. Installion code:
#2. Input: #3. Run code:
#4. Output:
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I did a fresh download and ran using your commands. The use of 'echo "Dichanthelium" > outgroupspecies' to set the outgroups does not work. This is read as "outgroupspecies" not the file. You should just use --outgroups "Dichanthelium". Since you are not setting a BSV, the outputs will be slightly different the the ones packaged with the script. |
How to view WGD result from output files? |
The PUG looks like a great tool for studing WGD. However, I don't get any results when I use demo data. So, could you give me some advises?
This is my code:
cd PUG/PUG_Test_Data
rm *txt *Species_Tree*
echo "Dichanthelium" > outgroupspecies
perl ../PUG.pl --trees PUG_demo_trees --species PUG_demo_tree.tre --outgroups outgroupspecies
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