From a7a7724495810c54906ea791412110f25b2b4c02 Mon Sep 17 00:00:00 2001 From: r-ash <39248272+r-ash@users.noreply.github.com> Date: Thu, 2 May 2024 14:13:29 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20mrc-ide/?= =?UTF-8?q?naomi@60ad718ad0de201d8449c166d45138e0be2e6a5d=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 6 ++--- LICENSE-text.html | 6 ++--- LICENSE.html | 6 ++--- articles/data-model.html | 6 ++--- articles/index.html | 6 ++--- articles/model-workflow.html | 6 ++--- authors.html | 12 +++++----- index.html | 6 ++--- news/index.html | 10 +++++--- pkgdown.yml | 4 ++-- reference/Imports.html | 17 ++++--------- reference/add_output_labels.html | 6 ++--- reference/age_bar_plotly.html | 6 ++--- reference/aggregate_anc.html | 6 ++--- reference/aggregate_art.html | 6 ++--- reference/align_inputs_outputs.html | 6 ++--- reference/anc_spectrum_warning.html | 6 ++--- reference/anc_testing_prev_mf.html | 6 ++--- reference/art_spectrum_warning.html | 6 ++--- reference/artnum_mf.html | 6 ++--- reference/assert_pjnz_shiny90.html | 6 ++--- reference/bar_plotly.html | 6 ++--- reference/build_hierarchy_label.html | 6 ++--- reference/cache_invariant.html | 6 ++--- .../calculate_prevalence_art_coverage.html | 6 ++--- reference/calibrate_outputs.html | 6 ++--- reference/cmc_date.html | 8 +++---- reference/create_adj_matrix.html | 6 ++--- reference/create_area_aggregation.html | 6 ++--- reference/create_areas.html | 6 ++--- reference/create_edge_list.html | 6 ++--- reference/cut_naomi_age_group.html | 6 ++--- reference/data_type_labels.html | 6 ++--- reference/demo_anc_testing.html | 6 ++--- reference/demo_area_boundaries.html | 6 ++--- reference/demo_area_hierarchy.html | 6 ++--- reference/demo_area_levels.html | 6 ++--- reference/demo_population_agesex.html | 6 ++--- reference/demo_survey_biomarker.html | 6 ++--- reference/demo_survey_clusters.html | 6 ++--- reference/demo_survey_hiv_indicators.html | 6 ++--- reference/demo_survey_individuals.html | 6 ++--- reference/demo_survey_meta.html | 6 ++--- reference/demo_survey_regions.html | 6 ++--- reference/disaggregate_0to4_outputs.html | 6 ++--- reference/district_barplot.html | 6 ++--- reference/dropdown_buttons.html | 6 ++--- reference/extract_pjnz_naomi.html | 6 ++--- reference/extract_pjnz_program_data.html | 6 ++--- reference/extract_shiny90_age_sex.html | 6 ++--- reference/fit_tmb.html | 6 ++--- reference/format_spectrum_total_warning.html | 6 ++--- reference/generate_comparison_report.html | 6 ++--- reference/generate_output_summary_report.html | 6 ++--- reference/get_age_group_out.html | 6 ++--- reference/get_age_groups.html | 6 ++--- reference/get_area_collection.html | 6 ++--- reference/get_colour_scale.html | 6 ++--- reference/get_five_year_age_groups.html | 6 ++--- reference/get_meta_indicator.html | 6 ++--- reference/get_metadata.html | 6 ++--- reference/get_plot_type_column_metadata.html | 6 ++--- reference/get_plotting_metadata.html | 24 +++++++++---------- reference/get_spec_aggr_interpolation.html | 6 ++--- reference/hintr_calibrate.html | 6 ++--- reference/hintr_calibrate_plot.html | 6 ++--- reference/hintr_comparison_plot.html | 6 ++--- reference/hintr_prepare_agyw_download.html | 6 ++--- ...ntr_prepare_coarse_age_group_download.html | 6 ++--- ...tr_prepare_comparison_report_download.html | 6 ++--- .../hintr_prepare_spectrum_download.html | 6 ++--- ...hintr_prepare_summary_report_download.html | 6 ++--- reference/hintr_run_model.html | 6 ++--- reference/hintr_validate_anc.html | 6 ++--- reference/hintr_validate_art.html | 6 ++--- reference/index.html | 11 ++++----- reference/interpolate_population_agesex.html | 6 ++--- reference/log_linear_interp.html | 6 ++--- reference/map_outputs.html | 6 ++--- reference/naomi_model_frame.html | 6 ++--- reference/naomi_objective_function_r.html | 6 ++--- reference/naomi_output_frame.html | 6 ++--- reference/output_naomi_warning.html | 6 ++--- reference/output_package.html | 6 ++--- reference/pipe.html | 6 ++--- reference/pop_pyramid_outputs.html | 6 ++--- reference/prepare_input_time_series_anc.html | 6 ++--- reference/prepare_input_time_series_art.html | 6 ++--- reference/prepare_tmb_inputs.html | 6 ++--- reference/quarter_year_labels.html | 6 ++--- reference/read_csv_partial_cols.html | 6 ++--- reference/read_hintr_output.html | 6 ++--- reference/read_metadata.html | 6 ++--- reference/read_population.html | 6 ++--- reference/read_spectrum_projection_name.html | 6 ++--- reference/read_spectrum_region_code.html | 6 ++--- reference/read_spectrum_region_name.html | 6 ++--- reference/report_tmb.html | 6 ++--- reference/sample_tmb.html | 6 ++--- reference/save_output.html | 6 ++--- reference/save_output_package.html | 6 ++--- reference/scale_gmrf_precision.html | 6 ++--- reference/scatter_plotly.html | 6 ++--- reference/sdreport_joint_precision.html | 6 ++--- reference/select_naomi_data.html | 6 ++--- reference/spread_areas.html | 6 ++--- reference/subset_naomi_output.html | 6 ++--- reference/subset_output_package.html | 6 ++--- reference/survey_mf.html | 6 ++--- reference/tag_data_inputs.html | 6 ++--- reference/th_map.html | 6 ++--- reference/validate_model_options.html | 6 ++--- reference/write_datapack_csv.html | 6 ++--- reference/write_navigator_checklist.html | 6 ++--- 114 files changed, 360 insertions(+), 368 deletions(-) diff --git a/404.html b/404.html index 0ea4a4e0..2e80f164 100644 --- a/404.html +++ b/404.html @@ -6,7 +6,7 @@ Page not found (404) • naomi - + @@ -32,7 +32,7 @@ naomi - 2.9.26 + 2.9.27 @@ -96,7 +96,7 @@

Page not found (404)

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/LICENSE-text.html b/LICENSE-text.html index ec88c2a9..191d1c0e 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -1,5 +1,5 @@ -License • naomiLicense • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -72,7 +72,7 @@

License

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/LICENSE.html b/LICENSE.html index 01a83396..05af1e2c 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -1,5 +1,5 @@ -MIT License • naomiMIT License • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -76,7 +76,7 @@

MIT License

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/articles/data-model.html b/articles/data-model.html index 7009a3ad..a923f43b 100644 --- a/articles/data-model.html +++ b/articles/data-model.html @@ -6,7 +6,7 @@ Naomi data model • naomi - + @@ -33,7 +33,7 @@ naomi - 2.9.26 + 2.9.27 @@ -305,7 +305,7 @@

Programme data

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/articles/index.html b/articles/index.html index 488215ab..365b7e08 100644 --- a/articles/index.html +++ b/articles/index.html @@ -1,5 +1,5 @@ -Articles • naomiArticles • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -71,7 +71,7 @@

All vignettes

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/articles/model-workflow.html b/articles/model-workflow.html index 1b3e1903..2c7cdaa3 100644 --- a/articles/model-workflow.html +++ b/articles/model-workflow.html @@ -6,7 +6,7 @@ Naomi Model Workflow Example • naomi - + @@ -33,7 +33,7 @@ naomi - 2.9.26 + 2.9.27 @@ -542,7 +542,7 @@

4. Prepare model inputs

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/authors.html b/authors.html index 763237ec..eaedba61 100644 --- a/authors.html +++ b/authors.html @@ -1,5 +1,5 @@ -Authors and Citation • naomiAuthors and Citation • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -51,7 +51,7 @@
-

Authors

+

Authors and Citation

@@ -70,13 +70,13 @@

Citation

Eaton J (2024). naomi: Naomi Model for Subnational HIV Estimates. -R package version 2.9.26. +R package version 2.9.27. 

@Manual{,
   title = {naomi: Naomi Model for Subnational HIV Estimates},
   author = {Jeff Eaton},
   year = {2024},
-  note = {R package version 2.9.26},
+  note = {R package version 2.9.27},
 }
@@ -90,7 +90,7 @@

Citation

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/index.html b/index.html index b0b92d59..15bcb498 100644 --- a/index.html +++ b/index.html @@ -6,7 +6,7 @@ Naomi Model for Subnational HIV Estimates • naomi - + @@ -33,7 +33,7 @@ naomi - 2.9.26 + 2.9.27 @@ -156,7 +156,7 @@

Developers

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/news/index.html b/news/index.html index 3d385a90..f8ff6f9f 100644 --- a/news/index.html +++ b/news/index.html @@ -1,5 +1,5 @@ -Changelog • naomiChangelog • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -54,6 +54,10 @@

Changelog

+
+

naomi 2.9.27

+

naomi 2.9.26

diff --git a/pkgdown.yml b/pkgdown.yml index 179fdcde..eaf71627 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -1,8 +1,8 @@ pandoc: 3.1.11 -pkgdown: 2.0.7 +pkgdown: 2.0.9 pkgdown_sha: ~ articles: data-model: data-model.html model-workflow: model-workflow.html -last_built: 2024-04-05T13:34Z +last_built: 2024-05-02T14:12Z diff --git a/reference/Imports.html b/reference/Imports.html index 51d7d9f0..400415f0 100644 --- a/reference/Imports.html +++ b/reference/Imports.html @@ -1,11 +1,5 @@ -We need to import these as they are used by dependencies (first90) -unalified and need to be available in the package environment -for the tests to be able to run in a background progress (i.e. -when running in parllel) — Imports • naomiWe need to import these as they are used by dependencies (first90) unalified and need to be available in the package environment for the tests to be able to run in a background progress (i.e. when running in parllel) — Imports • naomiAdd labels to output indicators — add_output_labels • naomiAdd labels to output indicators — add_output_labels • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -92,7 +92,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/age_bar_plotly.html b/reference/age_bar_plotly.html index 008fdcb4..b2f2800a 100644 --- a/reference/age_bar_plotly.html +++ b/reference/age_bar_plotly.html @@ -1,5 +1,5 @@ -Plotly barplot comparing age distribution of survey inputs and naomi outputs — age_bar_plotly • naomiPlotly barplot comparing age distribution of survey inputs and naomi outputs — age_bar_plotly • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -90,7 +90,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/aggregate_anc.html b/reference/aggregate_anc.html index 6097d9fa..0547c855 100644 --- a/reference/aggregate_anc.html +++ b/reference/aggregate_anc.html @@ -1,5 +1,5 @@ -Aggregate ANC data according to area hierarchy — aggregate_anc • naomiAggregate ANC data according to area hierarchy — aggregate_anc • naomiAggregate ART data according to area hierarchy — aggregate_art • naomiAggregate ART data according to area hierarchy — aggregate_art • naomiAlign model data inputs and model estimates — align_inputs_outputs • naomiAlign model data inputs and model estimates — align_inputs_outputs • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -90,7 +90,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/anc_spectrum_warning.html b/reference/anc_spectrum_warning.html index e57d0d94..3ab3b3af 100644 --- a/reference/anc_spectrum_warning.html +++ b/reference/anc_spectrum_warning.html @@ -1,5 +1,5 @@ -Compare aggregated district ANC inputs + spectrum totals — anc_spectrum_warning • naomiCompare aggregated district ANC inputs + spectrum totals — anc_spectrum_warning • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -90,7 +90,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/anc_testing_prev_mf.html b/reference/anc_testing_prev_mf.html index 868a3717..7602b226 100644 --- a/reference/anc_testing_prev_mf.html +++ b/reference/anc_testing_prev_mf.html @@ -1,5 +1,5 @@ -Prepare Model Frames for Programme Datasets — anc_testing_prev_mf • naomiPrepare Model Frames for Programme Datasets — anc_testing_prev_mf • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -100,7 +100,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/art_spectrum_warning.html b/reference/art_spectrum_warning.html index 5fbab35e..aa571c06 100644 --- a/reference/art_spectrum_warning.html +++ b/reference/art_spectrum_warning.html @@ -1,5 +1,5 @@ -Compare aggregated district ART inputs + spectrum totals — art_spectrum_warning • naomiCompare aggregated district ART inputs + spectrum totals — art_spectrum_warning • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -90,7 +90,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/artnum_mf.html b/reference/artnum_mf.html index 0a5506f6..b56426f5 100644 --- a/reference/artnum_mf.html +++ b/reference/artnum_mf.html @@ -1,5 +1,5 @@ -Build artnum model frame — artnum_mf • naomiBuild artnum model frame — artnum_mf • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -88,7 +88,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/assert_pjnz_shiny90.html b/reference/assert_pjnz_shiny90.html index d2ff97c0..0928f72c 100644 --- a/reference/assert_pjnz_shiny90.html +++ b/reference/assert_pjnz_shiny90.html @@ -1,5 +1,5 @@ -Check whether PJNZ contains .shiny90 file — assert_pjnz_shiny90 • naomiCheck whether PJNZ contains .shiny90 file — assert_pjnz_shiny90 • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -88,7 +88,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/bar_plotly.html b/reference/bar_plotly.html index 0cf7e893..336484d2 100644 --- a/reference/bar_plotly.html +++ b/reference/bar_plotly.html @@ -1,5 +1,5 @@ -Plotly barplot comparing geographical distribution of data inputs and naomi outputs — bar_plotly • naomiPlotly barplot comparing geographical distribution of data inputs and naomi outputs — bar_plotly • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -98,7 +98,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/build_hierarchy_label.html b/reference/build_hierarchy_label.html index 25371049..1278e455 100644 --- a/reference/build_hierarchy_label.html +++ b/reference/build_hierarchy_label.html @@ -1,5 +1,5 @@ -Return the translated label & description for a set of plot types — build_hierarchy_label • naomiReturn the translated label & description for a set of plot types — build_hierarchy_label • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -89,7 +89,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/cache_invariant.html b/reference/cache_invariant.html index eb306bf2..d8b49cb5 100644 --- a/reference/cache_invariant.html +++ b/reference/cache_invariant.html @@ -1,5 +1,5 @@ -Make a function cache invariant — cache_invariant • naomiMake a function cache invariant — cache_invariant • naomiCalculate prevalence and ART coverage from ANC input data — calculate_prevalence_art_coverage • naomiCalculate prevalence and ART coverage from ANC input data — calculate_prevalence_art_coverage • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -88,7 +88,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/calibrate_outputs.html b/reference/calibrate_outputs.html index c62865db..e8fe0d39 100644 --- a/reference/calibrate_outputs.html +++ b/reference/calibrate_outputs.html @@ -1,5 +1,5 @@ -Calibrate naomi model outputs — calibrate_outputs • naomiCalibrate naomi model outputs — calibrate_outputs • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -175,7 +175,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/cmc_date.html b/reference/cmc_date.html index f88cde9c..a66d5c2a 100644 --- a/reference/cmc_date.html +++ b/reference/cmc_date.html @@ -1,5 +1,5 @@ -Convert Date to Century Month Code (CMC) — cmc_date • naomiConvert Date to Century Month Code (CMC) — cmc_date • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -88,7 +88,7 @@

References

Examples

cmc_date(Sys.Date())
-#> [1] 1492
+#> [1] 1493
 cmc_date(as.Date("1987-02-11", format = "%Y-%m-%d"))
 #> [1] 1046
 
@@ -106,7 +106,7 @@ 
Examples
-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/create_adj_matrix.html b/reference/create_adj_matrix.html index 4b9b60d7..fc506a2f 100644 --- a/reference/create_adj_matrix.html +++ b/reference/create_adj_matrix.html @@ -1,5 +1,5 @@ -Create adjacency matrix from spatial polygons — create_adj_matrix • naomiCreate adjacency matrix from spatial polygons — create_adj_matrix • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -93,7 +93,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/create_area_aggregation.html b/reference/create_area_aggregation.html index fd992641..79ae03b0 100644 --- a/reference/create_area_aggregation.html +++ b/reference/create_area_aggregation.html @@ -1,5 +1,5 @@ -Long data frame mapping area hierarchy areas to model level areas — create_area_aggregation • naomiLong data frame mapping area hierarchy areas to model level areas — create_area_aggregation • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -263,7 +263,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/create_areas.html b/reference/create_areas.html index 8536164b..fac69449 100644 --- a/reference/create_areas.html +++ b/reference/create_areas.html @@ -1,5 +1,5 @@ -Create an Areas Object — create_areas • naomiCreate an Areas Object — create_areas • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -188,7 +188,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/create_edge_list.html b/reference/create_edge_list.html index d40712a3..5d82104c 100644 --- a/reference/create_edge_list.html +++ b/reference/create_edge_list.html @@ -1,5 +1,5 @@ -Create edgelist from adjacency matrix — create_edge_list • naomiCreate edgelist from adjacency matrix — create_edge_list • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -82,7 +82,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/cut_naomi_age_group.html b/reference/cut_naomi_age_group.html index 60c0a0fb..52ebdf55 100644 --- a/reference/cut_naomi_age_group.html +++ b/reference/cut_naomi_age_group.html @@ -1,5 +1,5 @@ -Cut Five Year Age Groups — cut_naomi_age_group • naomiCut Five Year Age Groups — cut_naomi_age_group • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -92,7 +92,7 @@

See also

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/data_type_labels.html b/reference/data_type_labels.html index ec415520..a52e8038 100644 --- a/reference/data_type_labels.html +++ b/reference/data_type_labels.html @@ -1,5 +1,5 @@ -Get id to label mapping for calibration plot data type — data_type_labels • naomiGet id to label mapping for calibration plot data type — data_type_labels • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -82,7 +82,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_anc_testing.html b/reference/demo_anc_testing.html index f464e2e9..e83c2e18 100644 --- a/reference/demo_anc_testing.html +++ b/reference/demo_anc_testing.html @@ -1,5 +1,5 @@ -Programme data: Malawi routine HIV service delivery data — demo_anc_testing • naomiProgramme data: Malawi routine HIV service delivery data — demo_anc_testing • naomi naomi - 2.9.26 + 2.9.27 @@ -177,7 +177,7 @@

See also

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_area_boundaries.html b/reference/demo_area_boundaries.html index 91aab8f3..e316a0fa 100644 --- a/reference/demo_area_boundaries.html +++ b/reference/demo_area_boundaries.html @@ -1,5 +1,5 @@ -Malawi area boundaries. — demo_area_boundaries • naomiMalawi area boundaries. — demo_area_boundaries • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -84,7 +84,7 @@

Source

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_area_hierarchy.html b/reference/demo_area_hierarchy.html index a30e76e6..b6555c01 100644 --- a/reference/demo_area_hierarchy.html +++ b/reference/demo_area_hierarchy.html @@ -1,5 +1,5 @@ -Malawi area hierarchy — demo_area_hierarchy • naomiMalawi area hierarchy — demo_area_hierarchy • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -84,7 +84,7 @@

Source

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_area_levels.html b/reference/demo_area_levels.html index 1f5b65a8..c863e59f 100644 --- a/reference/demo_area_levels.html +++ b/reference/demo_area_levels.html @@ -1,5 +1,5 @@ -Malawi area levels. — demo_area_levels • naomiMalawi area levels. — demo_area_levels • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -84,7 +84,7 @@

Source

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_population_agesex.html b/reference/demo_population_agesex.html index fb5719ee..6316e925 100644 --- a/reference/demo_population_agesex.html +++ b/reference/demo_population_agesex.html @@ -1,5 +1,5 @@ -Malawi age-sex stratified population data — demo_population_agesex • naomiMalawi age-sex stratified population data — demo_population_agesex • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -84,7 +84,7 @@

Source

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_survey_biomarker.html b/reference/demo_survey_biomarker.html index 678cbea6..743f9bf7 100644 --- a/reference/demo_survey_biomarker.html +++ b/reference/demo_survey_biomarker.html @@ -1,5 +1,5 @@ -Malawi survye biomarkers — demo_survey_biomarker • naomiMalawi survye biomarkers — demo_survey_biomarker • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -84,7 +84,7 @@

Source

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_survey_clusters.html b/reference/demo_survey_clusters.html index 36e58093..61f1664f 100644 --- a/reference/demo_survey_clusters.html +++ b/reference/demo_survey_clusters.html @@ -1,5 +1,5 @@ -Malawi survey clusters — demo_survey_clusters • naomiMalawi survey clusters — demo_survey_clusters • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -84,7 +84,7 @@

Source

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_survey_hiv_indicators.html b/reference/demo_survey_hiv_indicators.html index 10245149..d09a31e1 100644 --- a/reference/demo_survey_hiv_indicators.html +++ b/reference/demo_survey_hiv_indicators.html @@ -1,5 +1,5 @@ -Malawi HIV indicators — demo_survey_hiv_indicators • naomiMalawi HIV indicators — demo_survey_hiv_indicators • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -84,7 +84,7 @@

Source

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_survey_individuals.html b/reference/demo_survey_individuals.html index 42ae21cf..523a6197 100644 --- a/reference/demo_survey_individuals.html +++ b/reference/demo_survey_individuals.html @@ -1,5 +1,5 @@ -Malawi survey individuals — demo_survey_individuals • naomiMalawi survey individuals — demo_survey_individuals • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -84,7 +84,7 @@

Source

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_survey_meta.html b/reference/demo_survey_meta.html index 0657fa41..d3c47c7f 100644 --- a/reference/demo_survey_meta.html +++ b/reference/demo_survey_meta.html @@ -1,5 +1,5 @@ -Malawi survey metadata — demo_survey_meta • naomiMalawi survey metadata — demo_survey_meta • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -84,7 +84,7 @@

Source

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/demo_survey_regions.html b/reference/demo_survey_regions.html index 7a8c3279..bc3dc8db 100644 --- a/reference/demo_survey_regions.html +++ b/reference/demo_survey_regions.html @@ -1,5 +1,5 @@ -Malawi survey regions — demo_survey_regions • naomiMalawi survey regions — demo_survey_regions • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -84,7 +84,7 @@

Source

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/disaggregate_0to4_outputs.html b/reference/disaggregate_0to4_outputs.html index b519b4cc..df1833f4 100644 --- a/reference/disaggregate_0to4_outputs.html +++ b/reference/disaggregate_0to4_outputs.html @@ -1,5 +1,5 @@ -Disaggregate age 0-4 outputs to <1 / 1-4 — disaggregate_0to4_outputs • naomiDisaggregate age 0-4 outputs to <1 / 1-4 — disaggregate_0to4_outputs • naomiCreate district bar plot — district_barplot • naomiCreate district bar plot — district_barplot • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -150,7 +150,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/dropdown_buttons.html b/reference/dropdown_buttons.html index 949295f9..f91e802a 100644 --- a/reference/dropdown_buttons.html +++ b/reference/dropdown_buttons.html @@ -1,5 +1,5 @@ -Automatically make drop drop buttons for plotly filter — dropdown_buttons • naomiAutomatically make drop drop buttons for plotly filter — dropdown_buttons • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -92,7 +92,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/extract_pjnz_naomi.html b/reference/extract_pjnz_naomi.html index 59fb7804..cbe4f666 100644 --- a/reference/extract_pjnz_naomi.html +++ b/reference/extract_pjnz_naomi.html @@ -1,5 +1,5 @@ -Extract Model Inputs from Spectrum PJNZ — extract_pjnz_naomi • naomiExtract Model Inputs from Spectrum PJNZ — extract_pjnz_naomi • naomiExtract ART and ANC testing program data inputs from Spectrum PJNZ — extract_pjnz_program_data • naomiExtract ART and ANC testing program data inputs from Spectrum PJNZ — extract_pjnz_program_data • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -96,7 +96,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/extract_shiny90_age_sex.html b/reference/extract_shiny90_age_sex.html index 1eb56071..9bff46c1 100644 --- a/reference/extract_shiny90_age_sex.html +++ b/reference/extract_shiny90_age_sex.html @@ -1,5 +1,5 @@ -Export proportion aware by five year age group from Shiny90 — extract_shiny90_age_sex • naomiExport proportion aware by five year age group from Shiny90 — extract_shiny90_age_sex • naomiFit TMB model — fit_tmb • naomiFit TMB model — fit_tmb • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -110,7 +110,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/format_spectrum_total_warning.html b/reference/format_spectrum_total_warning.html index 20520214..6173037f 100644 --- a/reference/format_spectrum_total_warning.html +++ b/reference/format_spectrum_total_warning.html @@ -1,5 +1,5 @@ -Format spectrum total warnings — format_spectrum_total_warning • naomiFormat spectrum total warnings — format_spectrum_total_warning • naomiGenerate and save comparison report at specified path — generate_comparison_report • naomiGenerate and save comparison report at specified path — generate_comparison_report • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -96,7 +96,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/generate_output_summary_report.html b/reference/generate_output_summary_report.html index 51e56402..5b79a9a6 100644 --- a/reference/generate_output_summary_report.html +++ b/reference/generate_output_summary_report.html @@ -1,5 +1,5 @@ -Generate and save summary report at specified path — generate_output_summary_report • naomiGenerate and save summary report at specified path — generate_output_summary_report • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -96,7 +96,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/get_age_group_out.html b/reference/get_age_group_out.html index 144f964f..5f95b955 100644 --- a/reference/get_age_group_out.html +++ b/reference/get_age_group_out.html @@ -1,5 +1,5 @@ -Get age group ids for output — get_age_group_out • naomiGet age group ids for output — get_age_group_out • naomiData frame of age groups — get_age_groups • naomiData frame of age groups — get_age_groups • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -82,7 +82,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/get_area_collection.html b/reference/get_area_collection.html index 5a6afa75..1ee01630 100644 --- a/reference/get_area_collection.html +++ b/reference/get_area_collection.html @@ -1,5 +1,5 @@ -Get a collection of areas — get_area_collection • naomiGet a collection of areas — get_area_collection • naomiGet colour scale and ranges for a particular country — get_colour_scale • naomiGet colour scale and ranges for a particular country — get_colour_scale • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -91,7 +91,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/get_five_year_age_groups.html b/reference/get_five_year_age_groups.html index a99fc580..bb4fe37a 100644 --- a/reference/get_five_year_age_groups.html +++ b/reference/get_five_year_age_groups.html @@ -1,5 +1,5 @@ -Get 5 year age groups — get_five_year_age_groups • naomiGet 5 year age groups — get_five_year_age_groups • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -100,7 +100,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/get_meta_indicator.html b/reference/get_meta_indicator.html index cfdce9f7..dd7dd208 100644 --- a/reference/get_meta_indicator.html +++ b/reference/get_meta_indicator.html @@ -1,5 +1,5 @@ -Get indicator metadata — get_meta_indicator • naomiGet indicator metadata — get_meta_indicator • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -198,7 +198,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/get_metadata.html b/reference/get_metadata.html index 868e594a..68e6a77a 100644 --- a/reference/get_metadata.html +++ b/reference/get_metadata.html @@ -1,5 +1,5 @@ -Get indicator metadata as a data frame — get_metadata • naomiGet indicator metadata as a data frame — get_metadata • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -82,7 +82,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/get_plot_type_column_metadata.html b/reference/get_plot_type_column_metadata.html index 0bbdbdf5..38f54dae 100644 --- a/reference/get_plot_type_column_metadata.html +++ b/reference/get_plot_type_column_metadata.html @@ -1,5 +1,5 @@ -Return the translated label & description for a set of plot types — get_plot_type_column_metadata • naomiReturn the translated label & description for a set of plot types — get_plot_type_column_metadata • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -89,7 +89,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/get_plotting_metadata.html b/reference/get_plotting_metadata.html index 4353e6b3..71486a20 100644 --- a/reference/get_plotting_metadata.html +++ b/reference/get_plotting_metadata.html @@ -1,5 +1,5 @@ -Get plotting metadata for a particular country — get_plotting_metadata • naomiGet plotting metadata for a particular country — get_plotting_metadata • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -407,15 +407,15 @@

Examples

#> 70 10 0,0 24 default interpolateOranges 0 3.5e+05 #> 71 10 0,0 25 default interpolateOranges 0 7.0e+05 #> 72 10 0,0 25 default interpolateOranges 0 7.0e+05 -#> 73 NA 0 26 default interpolateGreys 0 1.2e+00 -#> 74 NA 0 27 default interpolateReds 0 1.2e+00 -#> 75 NA 0 28 default interpolateBlues 0 1.2e+00 -#> 76 NA 0 29 default interpolateGreens 0 1.2e+00 -#> 77 NA 0 30 default interpolateBlues 0 1.2e+00 -#> 78 NA 0 31 default interpolateReds 0 1.2e+00 -#> 79 NA 0 32 default interpolateGreens 0 1.2e+00 -#> 80 NA 0 33 default interpolateBlues 0 1.2e+00 -#> 81 NA 0 34 default interpolateBlues 0 1.2e+00 +#> 73 NA 0.0 26 default interpolateGreys 0 1.2e+00 +#> 74 NA 0.0 27 default interpolateReds 0 1.2e+00 +#> 75 NA 0.0 28 default interpolateBlues 0 1.2e+00 +#> 76 NA 0.0 29 default interpolateGreens 0 1.2e+00 +#> 77 NA 0.0 30 default interpolateBlues 0 1.2e+00 +#> 78 NA 0.0 31 default interpolateReds 0 1.2e+00 +#> 79 NA 0.0 32 default interpolateGreens 0 1.2e+00 +#> 80 NA 0.0 33 default interpolateBlues 0 1.2e+00 +#> 81 NA 0.0 34 default interpolateBlues 0 1.2e+00 #> 82 NA 0.0% 35 default interpolateOranges 0 5.0e-01 #> 83 NA 0.0% 36 default interpolateOranges 0 1.0e+00 #> invert_scale @@ -516,7 +516,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/get_spec_aggr_interpolation.html b/reference/get_spec_aggr_interpolation.html index 0e1beac4..6089d520 100644 --- a/reference/get_spec_aggr_interpolation.html +++ b/reference/get_spec_aggr_interpolation.html @@ -1,5 +1,5 @@ -Interpolate Spectrum to quarter_id — get_spec_aggr_interpolation • naomiInterpolate Spectrum to quarter_id — get_spec_aggr_interpolation • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -86,7 +86,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/hintr_calibrate.html b/reference/hintr_calibrate.html index 52fb9ca9..cd9bc707 100644 --- a/reference/hintr_calibrate.html +++ b/reference/hintr_calibrate.html @@ -1,5 +1,5 @@ -Calibrate hintr_output — hintr_calibrate • naomiCalibrate hintr_output — hintr_calibrate • naomiGet data for hintr calibrate plot — hintr_calibrate_plot • naomiGet data for hintr calibrate plot — hintr_calibrate_plot • naomiGet data for hintr comparison plot — hintr_comparison_plot • naomiGet data for hintr comparison plot — hintr_comparison_plot • naomiPrepare AGYW tool download — hintr_prepare_agyw_download • naomiPrepare AGYW tool download — hintr_prepare_agyw_download • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -96,7 +96,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/hintr_prepare_coarse_age_group_download.html b/reference/hintr_prepare_coarse_age_group_download.html index 6a2e9d62..b8640a63 100644 --- a/reference/hintr_prepare_coarse_age_group_download.html +++ b/reference/hintr_prepare_coarse_age_group_download.html @@ -1,5 +1,5 @@ -Prepare coarse age group download — hintr_prepare_coarse_age_group_download • naomiPrepare coarse age group download — hintr_prepare_coarse_age_group_download • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -95,7 +95,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/hintr_prepare_comparison_report_download.html b/reference/hintr_prepare_comparison_report_download.html index 99244787..089727ae 100644 --- a/reference/hintr_prepare_comparison_report_download.html +++ b/reference/hintr_prepare_comparison_report_download.html @@ -1,5 +1,5 @@ -Prepare comparison report download — hintr_prepare_comparison_report_download • naomiPrepare comparison report download — hintr_prepare_comparison_report_download • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -95,7 +95,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/hintr_prepare_spectrum_download.html b/reference/hintr_prepare_spectrum_download.html index 3de3e78e..051c4bf4 100644 --- a/reference/hintr_prepare_spectrum_download.html +++ b/reference/hintr_prepare_spectrum_download.html @@ -1,5 +1,5 @@ -Prepare spectrum download — hintr_prepare_spectrum_download • naomiPrepare spectrum download — hintr_prepare_spectrum_download • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -106,7 +106,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/hintr_prepare_summary_report_download.html b/reference/hintr_prepare_summary_report_download.html index c252ee00..58bcd086 100644 --- a/reference/hintr_prepare_summary_report_download.html +++ b/reference/hintr_prepare_summary_report_download.html @@ -1,5 +1,5 @@ -Prepare summary report download — hintr_prepare_summary_report_download • naomiPrepare summary report download — hintr_prepare_summary_report_download • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -95,7 +95,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/hintr_run_model.html b/reference/hintr_run_model.html index 6ca95b50..4be5a3c9 100644 --- a/reference/hintr_run_model.html +++ b/reference/hintr_run_model.html @@ -1,5 +1,5 @@ -Run the model and save output — hintr_run_model • naomiRun the model and save output — hintr_run_model • naomiRun validation for ANC input — hintr_validate_anc • naomiRun validation for ANC input — hintr_validate_anc • naomiRun validation for ART input — hintr_validate_art • naomiRun validation for ART input — hintr_validate_art • naomiFunction reference • naomiFunction reference • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -60,10 +60,7 @@

All functions

Imports

-

We need to import these as they are used by dependencies (first90) -unalified and need to be available in the package environment -for the tests to be able to run in a background progress (i.e. -when running in parllel)

+

We need to import these as they are used by dependencies (first90) unalified and need to be available in the package environment for the tests to be able to run in a background progress (i.e. when running in parllel)

add_output_labels()

@@ -433,7 +430,7 @@

All functions
-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/interpolate_population_agesex.html b/reference/interpolate_population_agesex.html index b80db366..da99efbc 100644 --- a/reference/interpolate_population_agesex.html +++ b/reference/interpolate_population_agesex.html @@ -1,5 +1,5 @@ -Log-linear interpolation of age/sex stratified population — interpolate_population_agesex • naomiLog-linear interpolation of age/sex stratified population — interpolate_population_agesex • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -109,7 +109,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/log_linear_interp.html b/reference/log_linear_interp.html index 7a967c4a..6dff2e2f 100644 --- a/reference/log_linear_interp.html +++ b/reference/log_linear_interp.html @@ -1,5 +1,5 @@ -Log-linear interpolation of NA values — log_linear_interp • naomiLog-linear interpolation of NA values — log_linear_interp • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -109,7 +109,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/map_outputs.html b/reference/map_outputs.html index c2120796..692046f4 100644 --- a/reference/map_outputs.html +++ b/reference/map_outputs.html @@ -1,5 +1,5 @@ -Create output map plot — map_outputs • naomiCreate output map plot — map_outputs • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -140,7 +140,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/naomi_model_frame.html b/reference/naomi_model_frame.html index 305dfc16..2f2ae21c 100644 --- a/reference/naomi_model_frame.html +++ b/reference/naomi_model_frame.html @@ -1,5 +1,5 @@ -Construct Model Frames and Adjacency Structures — naomi_model_frame • naomiConstruct Model Frames and Adjacency Structures — naomi_model_frame • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -231,7 +231,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/naomi_objective_function_r.html b/reference/naomi_objective_function_r.html index 6c55478b..446a2b88 100644 --- a/reference/naomi_objective_function_r.html +++ b/reference/naomi_objective_function_r.html @@ -1,5 +1,5 @@ -R implementation of Naomi model — naomi_objective_function_r • naomiR implementation of Naomi model — naomi_objective_function_r • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -98,7 +98,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/naomi_output_frame.html b/reference/naomi_output_frame.html index 49208fc4..903fb783 100644 --- a/reference/naomi_output_frame.html +++ b/reference/naomi_output_frame.html @@ -1,5 +1,5 @@ -Model Frame and Linear Transform for Aggregated Model Outputs — naomi_output_frame • naomiModel Frame and Linear Transform for Aggregated Model Outputs — naomi_output_frame • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -110,7 +110,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/output_naomi_warning.html b/reference/output_naomi_warning.html index 3021c7ba..0f294559 100644 --- a/reference/output_naomi_warning.html +++ b/reference/output_naomi_warning.html @@ -1,5 +1,5 @@ -Generate naomi warning for specific strata of simulated outputs — output_naomi_warning • naomiGenerate naomi warning for specific strata of simulated outputs — output_naomi_warning • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -94,7 +94,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/output_package.html b/reference/output_package.html index 1c9ccd66..ed4baa91 100644 --- a/reference/output_package.html +++ b/reference/output_package.html @@ -1,5 +1,5 @@ -Build output package from fit — output_package • naomiBuild output package from fit — output_package • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -105,7 +105,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/pipe.html b/reference/pipe.html index 3d0fa98a..4c50780d 100644 --- a/reference/pipe.html +++ b/reference/pipe.html @@ -1,5 +1,5 @@ -Pipe operator — %>% • naomiPipe operator — %>% • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -76,7 +76,7 @@

Pipe operator

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/pop_pyramid_outputs.html b/reference/pop_pyramid_outputs.html index 947a6e35..cb5b83fa 100644 --- a/reference/pop_pyramid_outputs.html +++ b/reference/pop_pyramid_outputs.html @@ -1,5 +1,5 @@ -Create population pyramid plot — pop_pyramid_outputs • naomiCreate population pyramid plot — pop_pyramid_outputs • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -127,7 +127,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/prepare_input_time_series_anc.html b/reference/prepare_input_time_series_anc.html index a80d45a6..06a935b2 100644 --- a/reference/prepare_input_time_series_anc.html +++ b/reference/prepare_input_time_series_anc.html @@ -1,5 +1,5 @@ -Prepare data for ANC input time series plots — prepare_input_time_series_anc • naomiPrepare data for ANC input time series plots — prepare_input_time_series_anc • naomiPrepare data for ART input time series plots — prepare_input_time_series_art • naomiPrepare data for ART input time series plots — prepare_input_time_series_art • naomiPrepare inputs for TMB model. — prepare_tmb_inputs • naomiPrepare inputs for TMB model. — prepare_tmb_inputs • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -100,7 +100,7 @@

See also

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/quarter_year_labels.html b/reference/quarter_year_labels.html index c57a1a81..fe032d0e 100644 --- a/reference/quarter_year_labels.html +++ b/reference/quarter_year_labels.html @@ -1,5 +1,5 @@ -Time period indexing — quarter_year_labels • naomiTime period indexing — quarter_year_labels • naomiRead CSV with missing columns — read_csv_partial_cols • naomiRead CSV with missing columns — read_csv_partial_cols • naomiRead hintr output — read_hintr_output • naomiRead hintr output — read_hintr_output • naomiGet indicator metadata as a data frame — read_metadata • naomiGet indicator metadata as a data frame — read_metadata • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -82,7 +82,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/read_population.html b/reference/read_population.html index be8e5f1f..945d09af 100644 --- a/reference/read_population.html +++ b/reference/read_population.html @@ -1,5 +1,5 @@ -Read Naomi structured input files — read_population • naomiRead Naomi structured input files — read_population • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -96,7 +96,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/read_spectrum_projection_name.html b/reference/read_spectrum_projection_name.html index e782603d..5841945d 100644 --- a/reference/read_spectrum_projection_name.html +++ b/reference/read_spectrum_projection_name.html @@ -1,5 +1,5 @@ -Read Spectrum Projection Name from Spectrum PJNZ — read_spectrum_projection_name • naomiRead Spectrum Projection Name from Spectrum PJNZ — read_spectrum_projection_name • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -96,7 +96,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/read_spectrum_region_code.html b/reference/read_spectrum_region_code.html index 4f830c4c..ffe676da 100644 --- a/reference/read_spectrum_region_code.html +++ b/reference/read_spectrum_region_code.html @@ -1,5 +1,5 @@ -Read Subnational Region Code from Spectrum PJNZ — read_spectrum_region_code • naomiRead Subnational Region Code from Spectrum PJNZ — read_spectrum_region_code • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -100,7 +100,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/read_spectrum_region_name.html b/reference/read_spectrum_region_name.html index 68a31073..7cf0d630 100644 --- a/reference/read_spectrum_region_name.html +++ b/reference/read_spectrum_region_name.html @@ -1,5 +1,5 @@ -Read Subnational Region Name from Spectrum PJNZ — read_spectrum_region_name • naomiRead Subnational Region Name from Spectrum PJNZ — read_spectrum_region_name • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -101,7 +101,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/report_tmb.html b/reference/report_tmb.html index 7f664dd6..746b357e 100644 --- a/reference/report_tmb.html +++ b/reference/report_tmb.html @@ -1,5 +1,5 @@ -Calculate Posterior Mean and Uncertainty Via TMB sdreport() — report_tmb • naomiCalculate Posterior Mean and Uncertainty Via TMB sdreport() — report_tmb • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -82,7 +82,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/sample_tmb.html b/reference/sample_tmb.html index 046d1661..5941832f 100644 --- a/reference/sample_tmb.html +++ b/reference/sample_tmb.html @@ -1,5 +1,5 @@ -Sample TMB fit — sample_tmb • naomiSample TMB fit — sample_tmb • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -110,7 +110,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/save_output.html b/reference/save_output.html index 6a086c23..a463e908 100644 --- a/reference/save_output.html +++ b/reference/save_output.html @@ -1,5 +1,5 @@ -Save outputs to zip file — save_output • naomiSave outputs to zip file — save_output • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -141,7 +141,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/save_output_package.html b/reference/save_output_package.html index 0943a5ed..5cffc2c5 100644 --- a/reference/save_output_package.html +++ b/reference/save_output_package.html @@ -1,5 +1,5 @@ -Save outputs to zip file — save_output_package • naomiSave outputs to zip file — save_output_package • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -138,7 +138,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/scale_gmrf_precision.html b/reference/scale_gmrf_precision.html index ac605bf3..49fe6f01 100644 --- a/reference/scale_gmrf_precision.html +++ b/reference/scale_gmrf_precision.html @@ -1,5 +1,5 @@ -Scale of GMRF precision matrix — scale_gmrf_precision • naomiScale of GMRF precision matrix — scale_gmrf_precision • naomiPlotly scatterplot data inputs and naomi outputs — scatter_plotly • naomiPlotly scatterplot data inputs and naomi outputs — scatter_plotly • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -114,7 +114,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/sdreport_joint_precision.html b/reference/sdreport_joint_precision.html index e128859a..27113890 100644 --- a/reference/sdreport_joint_precision.html +++ b/reference/sdreport_joint_precision.html @@ -1,5 +1,5 @@ -Get Joint Precision of TMB Fixed and Random — sdreport_joint_precision • naomiGet Joint Precision of TMB Fixed and Random — sdreport_joint_precision • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -114,7 +114,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/select_naomi_data.html b/reference/select_naomi_data.html index cf16cee1..6defb3c4 100644 --- a/reference/select_naomi_data.html +++ b/reference/select_naomi_data.html @@ -1,5 +1,5 @@ -Select data for model fitting — select_naomi_data • naomiSelect data for model fitting — select_naomi_data • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -211,7 +211,7 @@

See also

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/spread_areas.html b/reference/spread_areas.html index f8df174c..6afc0e07 100644 --- a/reference/spread_areas.html +++ b/reference/spread_areas.html @@ -1,5 +1,5 @@ -Spread area hierarchy to wide format — spread_areas • naomiSpread area hierarchy to wide format — spread_areas • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -97,7 +97,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/subset_naomi_output.html b/reference/subset_naomi_output.html index e8a0d602..3bb26d94 100644 --- a/reference/subset_naomi_output.html +++ b/reference/subset_naomi_output.html @@ -1,5 +1,5 @@ -Subset the results returned in Naomi output package — subset_naomi_output • naomiSubset the results returned in Naomi output package — subset_naomi_output • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -141,7 +141,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/subset_output_package.html b/reference/subset_output_package.html index ade9e758..c7fef1fb 100644 --- a/reference/subset_output_package.html +++ b/reference/subset_output_package.html @@ -1,5 +1,5 @@ -Resave a subsetted Naomi output package — subset_output_package • naomiResave a subsetted Naomi output package — subset_output_package • naomiPrepare model frames for survey datasets — survey_mf • naomiPrepare model frames for survey datasets — survey_mf • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -125,7 +125,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/tag_data_inputs.html b/reference/tag_data_inputs.html index dbc372d4..ce1274b7 100644 --- a/reference/tag_data_inputs.html +++ b/reference/tag_data_inputs.html @@ -1,5 +1,5 @@ -Tag data inputs — tag_data_inputs • naomiTag data inputs — tag_data_inputs • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -92,7 +92,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/th_map.html b/reference/th_map.html index a549128b..e1fc8d7e 100644 --- a/reference/th_map.html +++ b/reference/th_map.html @@ -1,5 +1,5 @@ -ggplot2 theme for plotting maps — th_map • naomiggplot2 theme for plotting maps — th_map • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -76,7 +76,7 @@

ggplot2 theme for plotting maps

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/validate_model_options.html b/reference/validate_model_options.html index 42bc52ab..6a385e5a 100644 --- a/reference/validate_model_options.html +++ b/reference/validate_model_options.html @@ -1,5 +1,5 @@ -Validate a set of model options — validate_model_options • naomiValidate a set of model options — validate_model_options • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -92,7 +92,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/write_datapack_csv.html b/reference/write_datapack_csv.html index dfd6658e..75f77bda 100644 --- a/reference/write_datapack_csv.html +++ b/reference/write_datapack_csv.html @@ -1,5 +1,5 @@ -Export naomi outputs to PEPFAR Data Pack format — write_datapack_csv • naomiExport naomi outputs to PEPFAR Data Pack format — write_datapack_csv • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -108,7 +108,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/reference/write_navigator_checklist.html b/reference/write_navigator_checklist.html index 894efdf0..0ed1546a 100644 --- a/reference/write_navigator_checklist.html +++ b/reference/write_navigator_checklist.html @@ -1,5 +1,5 @@ -Write UNAIDS Estimates Navigator checklist CSV — write_navigator_checklist • naomiWrite UNAIDS Estimates Navigator checklist CSV — write_navigator_checklist • naomi @@ -17,7 +17,7 @@ naomi - 2.9.26 + 2.9.27 @@ -86,7 +86,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.