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Synonyms getting dropped when making component #656

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joeflack4 opened this issue Sep 19, 2024 · 0 comments
Open

Synonyms getting dropped when making component #656

joeflack4 opened this issue Sep 19, 2024 · 0 comments
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joeflack4 commented Sep 19, 2024

Overview

Example case: DO:635, AIDS exactSynonym getting dropped.

Component download

    <owl:Class rdf:about="http://purl.obolibrary.org/obo/DOID_635">
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DOID_526"/>
        <rdfs:subClassOf>
            <owl:Restriction>
                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002451"/>
                <owl:someValuesFrom>
                    <owl:Class>
                        <owl:unionOf rdf:parseType="Collection">
                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/TRANS_0000006"/>
                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/TRANS_0000007"/>
                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/TRANS_0000011"/>
                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/TRANS_0000012"/>
                        </owl:unionOf>
                    </owl:Class>
                </owl:someValuesFrom>
            </owl:Restriction>
        </rdfs:subClassOf>
        <obo:IAO_0000115 xml:lang="en">A Human immunodeficiency virus infectious disease that results_in reduction in the numbers of CD4-bearing helper T cells below 200 per microliter of blood or 14% of all lymphocytes thereby rendering the subject highly vulnerable to life-threatening infections and cancers, has_material_basis_in Human immunodeficiency virus 1 or has_material_basis_in Human immunodeficiency virus 2, which are transmitted_by sexual contact, transmitted_by transfer of blood, semen, vaginal fluid, pre-ejaculate, or breast milk, transmitted_by congenital method, and transmitted_by contaminated needles. Opportunistic infections are common in people with AIDS.</obo:IAO_0000115>
        <oboInOwl:hasDbXref>EFO:0000765</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>ICD10CM:B20</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>MESH:D000163</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>NCI:C2851</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>SNOMEDCT_US_2023_03_01:62479008</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>UMLS_CUI:C0001175</oboInOwl:hasDbXref>
        <oboInOwl:hasExactSynonym xml:lang="en">AIDS</oboInOwl:hasExactSynonym>
        <oboInOwl:hasExactSynonym xml:lang="en">acquired Immune deficiency</oboInOwl:hasExactSynonym>
        <oboInOwl:hasOBONamespace>disease_ontology</oboInOwl:hasOBONamespace>
        <oboInOwl:hasRelatedSynonym xml:lang="en">acquired immune deficiency syndrome</oboInOwl:hasRelatedSynonym>
        <oboInOwl:id>DOID:635</oboInOwl:id>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#DO_infectious_disease_slim"/>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#NCIthesaurus"/>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#zoonotic_infectious_disease"/>
        <rdfs:label xml:lang="en">acquired immunodeficiency syndrome</rdfs:label>
        <skos:exactMatch>MESH:D000163</skos:exactMatch>
    </owl:Class>
    <owl:Axiom>
        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/DOID_635"/>
        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
        <owl:annotatedTarget xml:lang="en">A Human immunodeficiency virus infectious disease that results_in reduction in the numbers of CD4-bearing helper T cells below 200 per microliter of blood or 14% of all lymphocytes thereby rendering the subject highly vulnerable to life-threatening infections and cancers, has_material_basis_in Human immunodeficiency virus 1 or has_material_basis_in Human immunodeficiency virus 2, which are transmitted_by sexual contact, transmitted_by transfer of blood, semen, vaginal fluid, pre-ejaculate, or breast milk, transmitted_by congenital method, and transmitted_by contaminated needles. Opportunistic infections are common in people with AIDS.</owl:annotatedTarget>
        <dc:type rdf:resource="http://purl.obolibrary.org/obo/ECO_0007638"/>
        <dc:type rdf:resource="http://purl.obolibrary.org/obo/ECO_0007643"/>
        <oboInOwl:hasDbXref>url:http://en.wikipedia.org/wiki/AIDS</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&amp;va=aids</oboInOwl:hasDbXref>
    </owl:Axiom>
    <owl:Axiom>
        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/DOID_635"/>
        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
        <owl:annotatedTarget xml:lang="en">AIDS</owl:annotatedTarget>
        <oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/OMO_0003012"/>
    </owl:Axiom>

Component

    <owl:Class rdf:about="http://purl.obolibrary.org/obo/DOID_635">
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DOID_526"/>
        <oboInOwl:hasDbXref>EFO:0000765</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>ICD10CM:B20</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>MESH:D000163</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>NCI:C2851</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>UMLS_CUI:C0001175</oboInOwl:hasDbXref>
        <oboInOwl:hasExactSynonym xml:lang="en">acquired Immune deficiency</oboInOwl:hasExactSynonym>
        <oboInOwl:hasExactSynonym xml:lang="en">acquired immunodeficiency syndrome</oboInOwl:hasExactSynonym>
        <oboInOwl:hasRelatedSynonym xml:lang="en">acquired immune deficiency syndrome</oboInOwl:hasRelatedSynonym>
        <rdfs:label xml:lang="en">acquired immunodeficiency syndrome</rdfs:label>
        <skos:exactMatch>MESH:D000163</skos:exactMatch>
    </owl:Class>

@joeflack4 joeflack4 self-assigned this Sep 19, 2024
@joeflack4 joeflack4 added the bug Something isn't working label Sep 19, 2024
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