error #000: ../../../src/H5D.c in H5Dvlen_reclaim(): line 732: invalid argument

[mayanbriller]

Hello
I'm trying to convert a Seurat object to a h5ad file, but run into the following problem. Unfortunately I can't create a reproducible example.

Creating h5Seurat file for version 3.1.5.9900
Adding counts for RNA
Adding data for RNA
No variable features found for RNA
No feature-level metadata found for RNA
Adding counts for SCT
Adding data for SCT
Adding scale.data for SCT
No variable features found for SCT
No feature-level metadata found for SCT
Writing out SCTModel.list for SCT
Validating h5Seurat file
Adding scale.data from SCT as X
Error in self$read_low_level(file_space = self_space_id, mem_space = mem_space_id, :
HDF5-API Errors:
error #000: ../../../src/H5D.c in H5Dvlen_reclaim(): line 732: invalid argument
class: HDF5
major: Invalid arguments to routine
minor: Bad value