trouble converting SeuratObject to h5ad

[ncedi12]

Hi there, I've been trying to use the h5Seurat interface for converting a seurat object to h5ad.
But I keep getting the same error

First it creates the h5Seurat file but registers some warnings and errors

SaveH5Seurat(shh, filename = "SHH_tumorHUman.h5Seurat")

Creating h5Seurat file for version 3.1.5.9900
Adding counts for RNA
Adding data for RNA
No variable features found for RNA
No feature-level metadata found for RNA
Adding counts for SCT
Adding data for SCT
Adding scale.data for SCT
Adding variable features for SCT
No feature-level metadata found for SCT
Error in slot(object = object, name = x) :
no slot of name "median_umi" for this object of class "SCTModel"

when I run the conversion, this is the response

Convert("Obj_tum.h5Seurat", dest = "h5ad")

Validating h5Seurat file

Warning: Cannot find dataset with cell names

Warning: 'assay' not set, setting to 'RNA'

Error: Unknown file type: h5seurat

Pls advise on why this error keeps happening
Session info:

R version 4.2.2 (2022-10-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS 14.3

other attached packages:
[1] SeuratDisk_0.0.0.9021 lubridate_1.9.3 forcats_1.0.0
[4] stringr_1.5.1 dplyr_1.1.4 purrr_1.0.2
[7] readr_2.1.4 tidyr_1.3.1 tibble_3.2.1
[10] ggplot2_3.4.4 tidyverse_2.0.0 jsonlite_1.8.8
[13] pbmcref.SeuratData_1.0.0 pbmcsca.SeuratData_3.0.0 singscore_1.18.0
[16] GSEABase_1.60.0 graph_1.76.0 annotate_1.76.0
[19] XML_3.99-0.16 AnnotationDbi_1.60.2 IRanges_2.32.0
[22] S4Vectors_0.36.2 Biobase_2.58.0 BiocGenerics_0.44.0
[25] patchwork_1.2.0 ifnb.SeuratData_3.0.0 SeuratData_0.2.2.9001
[28] Azimuth_0.5.0 shinyBS_0.61.1 Seurat_5.0.1
[31] SeuratObject_5.0.1 sp_2.1-3

[FlowerPurr]

Hi there, I've been trying to use the h5Seurat interface for converting a seurat object to h5ad. But I keep getting the same error

First it creates the h5Seurat file but registers some warnings and errors

SaveH5Seurat(shh, filename = "SHH_tumorHUman.h5Seurat")

Creating h5Seurat file for version 3.1.5.9900 Adding counts for RNA Adding data for RNA No variable features found for RNA No feature-level metadata found for RNA Adding counts for SCT Adding data for SCT Adding scale.data for SCT Adding variable features for SCT No feature-level metadata found for SCT Error in slot(object = object, name = x) : no slot of name "median_umi" for this object of class "SCTModel"

when I run the conversion, this is the response

Convert("Obj_tum.h5Seurat", dest = "h5ad")

Validating h5Seurat file

Warning: Cannot find dataset with cell names

Warning: 'assay' not set, setting to 'RNA'

Error: Unknown file type: h5seurat

Pls advise on why this error keeps happening Session info:

R version 4.2.2 (2022-10-31) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS 14.3

other attached packages: [1] SeuratDisk_0.0.0.9021 lubridate_1.9.3 forcats_1.0.0 [4] stringr_1.5.1 dplyr_1.1.4 purrr_1.0.2 [7] readr_2.1.4 tidyr_1.3.1 tibble_3.2.1 [10] ggplot2_3.4.4 tidyverse_2.0.0 jsonlite_1.8.8 [13] pbmcref.SeuratData_1.0.0 pbmcsca.SeuratData_3.0.0 singscore_1.18.0 [16] GSEABase_1.60.0 graph_1.76.0 annotate_1.76.0 [19] XML_3.99-0.16 AnnotationDbi_1.60.2 IRanges_2.32.0 [22] S4Vectors_0.36.2 Biobase_2.58.0 BiocGenerics_0.44.0 [25] patchwork_1.2.0 ifnb.SeuratData_3.0.0 SeuratData_0.2.2.9001 [28] Azimuth_0.5.0 shinyBS_0.61.1 Seurat_5.0.1 [31] SeuratObject_5.0.1 sp_2.1-3

Hello, I have the same problem.