openfl-test.yml

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: OpenFL-Test

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]
    

jobs:
  build:

    runs-on: ubuntu-latest

    steps:
    - name: Free space
      run: |
        df -h
        sudo rm -rf /opt/ghc
        sudo rm -rf "/usr/local/share/boost"
        sudo rm -rf "$AGENT_TOOLSDIRECTORY"
        sudo rm -rf "$ANDROID_SDK_ROOT"
        df -h
    - name: Checkout
      uses: actions/checkout@v2
    
    # Use changed-files-specific action to collect file changes.
    # The following commented condition applied to a step will run that step only if non-docs files have changed.
    # It should be applied to all functionality-related steps.
    # if: steps.changed-files-specific.outputs.only_modified == 'false'
    - name: Detect and screen file changes
      id: changed-files-specific
      uses: tj-actions/changed-files@v34
      with:
          files: |
            .github/*.md
            .github/ISSUE_TEMPLATE/*.md
            .github/workflows/devcontainer.yml
            .github/workflows/docker-image.yml
            .devcontainer/**
            docs/**
            mlcube/**
            *.md
            LICENSE
            Dockerfile-*

    - name: Summarize docs and non-docs modifications
      run: |
        echo "List of docs files that have changed: ${{ steps.changed-files-specific.outputs.all_modified_files }}"
        echo "Changed non-docs files: ${{ steps.changed-files-specific.outputs.other_modified_files }}"
    
    # This second step is unnecessary but highly recommended because
    # It will cache database and saves time re-downloading it if database isn't stale.
    - name: Cache pip
      uses: actions/cache@v3
      with:
        path: ~/.cache/pip
        key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }}
        restore-keys: |
          ${{ runner.os }}-pip-
    - name: Set up Python 3.8
      if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
      uses: actions/setup-python@v4
      with:
        python-version: 3.8
    - name: Install dependencies and package
      if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
      run: |
        sudo apt-get install libvips libvips-tools -y
        python -m pip install --upgrade pip
        python -m pip install wheel
        pip install torch==1.13.1+cpu torchvision==0.14.1+cpu torchaudio==0.13.1 --extra-index-url https://download.pytorch.org/whl/cpu
        pip install -e .
    - name: Run generic unit tests to download data and construct CSVs
      if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
      run: |
        pytest --cov=. --cov-report=xml -k "generic_download"
        pytest --cov=. --cov-report=xml -k "generic_constructTrainingCSV"
    # openfl tests start here
    - name: Run OpenFL tests
      if: steps.changed-files-specific.outputs.only_modified == 'false' # Run on any non-docs change
      run: |
        echo "Removing onnx because of protobuf version conflict"
        pip uninstall onnx -y
        echo "Installing OpenFL"
        git clone https://github.com/securefederatedai/openfl.git
        cd openfl
        git fetch --tags
        git checkout $(git describe --tags --abbrev=0)
        pip install -e .
        cd ..
        echo "Copying files to appropriate directories"
        head -n 1 testing/data/train_3d_rad_segmentation.csv > /home/runner/work/GaNDLF/GaNDLF/openfl/seg_test_val.csv
        tail -n +9 testing/data/train_3d_rad_segmentation.csv >> /home/runner/work/GaNDLF/GaNDLF/openfl/seg_test_val.csv
        head -n 8 testing/data/train_3d_rad_segmentation.csv > /home/runner/work/GaNDLF/GaNDLF/openfl/seg_test_train.csv
        cd openfl
        python -m tests.github.test_fets_challenge --template fets_challenge_seg_test --fed_workspace aggregator --col1 col1 --col2 col2 --rounds-to-train 1