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metaT failing at rfam #208

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mflynn-lanl opened this issue Jun 24, 2024 · 1 comment
Closed

metaT failing at rfam #208

mflynn-lanl opened this issue Jun 24, 2024 · 1 comment
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@mflynn-lanl @kaijli

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@mflynn-lanl
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metaT

Project URL
https://nmdc-edge.org/admin/project?code=dekwfq0w9LzKA52O

Additional Info
metaT fails for smaller samples while running rfam, including /expanse/projects/nmdc/edge_app/nmdc-edge/data/test_data/Metatranscriptomics/test_small_interleave.fastq.gz
I've tried running using the metaT repository but it fails in the same place. The stderr file is empty and there doesn't seem to be anything helpful in the stdout file or in the Cromwell metadata
@kaijli
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kaijli commented Jul 9, 2024

microbiomedata/metaT#35

@kaijli kaijli closed this as completed Sep 20, 2024
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@mflynn-lanl @kaijli