- Fixed error on last step of calculating Ar concentrations: Ar signal was multiplied by the calibration factor for mass 28 rather than by the calibration factor for mass 40
- Indexing error on L144 that made all o2Sat.conc_uMol.kg calculate based on the first standard temp, not the collection temp of the sample
- Updated column names to correct units (updated to mg L-1 from mg)
- Added O2 and N2 saturation concentration calculations for all samples
- Removed "bubble correction" script
- Bracketing issue, where only results from group 1 are returned, fixed for single-temp and two-temp
- Bracketing issue and subsetting issue now fixed (thanks to Libby Mohr! :) )
- Support for single temperature MIMS bath setups added
- Updated Get Started vignetted with clarified directions and downloadable examples
- Concentrations now calculated using dissolved gas ratios for improved accuracy
- Added bubble correction calculation for dissolved oxygen
- Mistake in conversion from barometric pressure in units of Torr to units of atmospheres corrected
- Mistake in checking number of standard temperatures corrected
- Preparation for submission to CRAN
README.mdupdated with full workflow example- logo updated
mimsy()takesdatainput as a dataframe, no longer internally loads from file path
vignettes/mimsy.Rmdrewritten for clarity and screenshots added
mimsy()std.temps pulled from CollectionTemps column of Group 1 Standards, std.temps input argument now depreciated
mimsy()now indicates the standard temperatures used in an output message to the usermimsy()now checks that the length of std.temps vector is appropriate
- update
mimsy.save()to rely on non-depreciated forms ofopenxlsxfunctions
vignettes/mimsy.Rmdnow includes directions to save output as RData file
vignettes/mimsy.RmdandREADME.mdinstall instructions updated to fix bug where depenencies weren't downloading properly.
- Added
vignettes/mimsy.Rmdquick start guide for package. - Added
NEWS.mdfile to track changes to the package.