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Export grid distances and weights as a tiff file #199

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mogres opened this issue Sep 29, 2023 · 0 comments · Fixed by #216
Closed

Export grid distances and weights as a tiff file #199

mogres opened this issue Sep 29, 2023 · 0 comments · Fixed by #216

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@mogres
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mogres commented Sep 29, 2023

Use Case

We want to visualize distances and weights stored in the grid as a tiff file to explore 3D slices. Simularium example:
image

Solution

  1. Create array of values stored in the grid. This array will have the same size as the grid (may be high/low resolution depending on grid spacing)
  2. Use the ImageWriter class to write these values to an ome tiff image.
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Save gradient data as image mesoscope/cellpack
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@mogres