From ad56993ee2ad88a7fefe7387bf7332299cde7f90 Mon Sep 17 00:00:00 2001
From: Ruge Li <rugeli0605@gmail.com>
Date: Fri, 14 Jul 2023 15:24:34 -0700
Subject: [PATCH] formatting

---
 cellpack/autopack/DBHandler.py        | 6 +-----
 cellpack/autopack/FirebaseHandler.py  | 6 +++---
 cellpack/autopack/writers/__init__.py | 2 +-
 3 files changed, 5 insertions(+), 9 deletions(-)

diff --git a/cellpack/autopack/DBHandler.py b/cellpack/autopack/DBHandler.py
index b643bdbc7..64341ce57 100644
--- a/cellpack/autopack/DBHandler.py
+++ b/cellpack/autopack/DBHandler.py
@@ -391,9 +391,7 @@ def prep_data_for_db(data):
                 unpacked_value = vars(value)
                 modified_data[key] = unpacked_value
                 if isinstance(unpacked_value, dict):
-                    modified_data[key] = DBHandler.prep_data_for_db(
-                        unpacked_value
-                    )
+                    modified_data[key] = DBHandler.prep_data_for_db(unpacked_value)
             # If the value is a dictionary, recursively convert its nested lists to dictionaries
             elif isinstance(value, dict):
                 modified_data[key] = DBHandler.prep_data_for_db(value)
@@ -557,8 +555,6 @@ def update_or_create_metadata(self, collection, id, data):
         except NotFound:
             self.db.set_doc(collection, id, data)
 
-
-
     def prep_db_doc_for_download(self, db_doc):
         """
         convert data from db and resolve references.
diff --git a/cellpack/autopack/FirebaseHandler.py b/cellpack/autopack/FirebaseHandler.py
index a0b067605..a88c2528b 100644
--- a/cellpack/autopack/FirebaseHandler.py
+++ b/cellpack/autopack/FirebaseHandler.py
@@ -42,7 +42,7 @@ def get_creds():
         if creds is None or "firebase" not in creds:
             creds = FirebaseHandler.write_creds_path()
         return creds["firebase"]
-    
+
     @staticmethod
     def get_username():
         creds = read_json_file("./.creds")
@@ -61,7 +61,7 @@ def doc_id(doc):
     @staticmethod
     def create_path(collection, doc_id):
         return f"firebase:{collection}/{doc_id}"
-    
+
     @staticmethod
     def create_timestamp():
         return firestore.SERVER_TIMESTAMP
@@ -83,7 +83,7 @@ def update_doc(self, collection, id, data):
         doc_ref.update(data)
         print(f"successfully updated to path: {doc_ref.path}")
         return doc_ref
-    
+
     @staticmethod
     def update_reference_on_doc(doc_ref, index, new_item_ref):
         doc_ref.update({index: new_item_ref})
diff --git a/cellpack/autopack/writers/__init__.py b/cellpack/autopack/writers/__init__.py
index 1d2e167d2..04aeb3d06 100644
--- a/cellpack/autopack/writers/__init__.py
+++ b/cellpack/autopack/writers/__init__.py
@@ -101,7 +101,7 @@ def save_as_simularium(
                 autopack.helper.add_grid_data_to_scene(
                     f"{gradient.name}-distances", grid_positions, values
                 )
-        
+
         file_name = autopack.helper.writeToFile(
             f"{result_file_path}_results", env.boundingBox, env.name, env.version
         )