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Adding multiple count matrix files in the label counts in the config file for the cbBuild #241
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Hi, @devashishmohanta . Sorry for the delay. Currently, we can only display the expression values from one expression matrix. This is something @maximilianh is interested in implementing. It would allow someone to flip between raw counts, normalized expression, etc. Although I don't know what the time line is for that work. |
Hi, thanks for this feedback.
You can supply multiple matrices like this:
matrices=[ {'label':'counts','fileName':'counts_exprMatrix.tsv.gz'},
{'label':'data','fileName':'data_exprMatrix.tsv.gz'},
{'label':'scale','fileName':'scale_exprMatrix.tsv.gz'}]
But this will be used for downloads only. Right now these are not used for
coloring it. I assume you want
- a dropdown so the user can select a matrix
- and then the coloring will use the current matrix?
…On Mon, Apr 18, 2022 at 1:07 PM DEBASHISH MOHANTA ***@***.***> wrote:
Hello, cell browser developers,
I had a query regarding the count matrix input. Does the cell browser
allow using multiple count matrix data in the cellbrowser.conf file to use
it for cbBuild operation so that multiple counts matrix data can be used.
This is similar to what I am looking for:
[image: image]
<https://user-images.githubusercontent.com/43270576/163799780-5a01660d-bdd9-4d9d-8114-6c4d43ab733b.png>
It will really helpful if you can any way to it
Thanks and Regards
Debashish
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Hi @devashishmohanta are you still interested in this feature?
…On Fri, May 27, 2022 at 12:55 AM Matt Speir ***@***.***> wrote:
Hi, @devashishmohanta <https://github.com/devashishmohanta> .
Sorry for the delay. Currently, we can only display the expression values
from one expression matrix.
This is something @maximilianh <https://github.com/maximilianh> is
interested in implementing. It would allow someone to flip between raw
counts, normalized expression, etc. Although I don't know what the time
line is for that work.
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<#241 (comment)>,
or unsubscribe
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Hello, cell browser developers,
I had a query regarding the count matrix input. Does the cell browser allow using multiple count matrix data in the cellbrowser.conf file to use it for cbBuild operation so that multiple counts matrix data can be used.
This is similar to what I am looking for:
It will really helpful if you can any way to it
Thanks and Regards
Debashish
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