From f0928f09a2f2330c0d84f68672e4e332d8a915a0 Mon Sep 17 00:00:00 2001 From: Shyue Ping Ong Date: Sat, 12 Mar 2022 07:14:28 -0800 Subject: [PATCH] Update dev docs --- docs/_modules/index.html | 4 +- docs/_modules/monty/bisect.html | 4 +- docs/_modules/monty/collections.html | 4 +- docs/_modules/monty/design_patterns.html | 7 +- docs/_modules/monty/dev.html | 14 ++-- docs/_modules/monty/fnmatch.html | 4 +- docs/_modules/monty/fractions.html | 4 +- docs/_modules/monty/functools.html | 10 +-- docs/_modules/monty/inspect.html | 8 +-- docs/_modules/monty/io.html | 14 ++-- docs/_modules/monty/itertools.html | 4 +- docs/_modules/monty/json.html | 78 ++++++++++++++++------- docs/_modules/monty/logging.html | 8 +-- docs/_modules/monty/math.html | 4 +- docs/_modules/monty/msgpack.html | 6 +- docs/_modules/monty/multiprocessing.html | 6 +- docs/_modules/monty/operator.html | 4 +- docs/_modules/monty/os.html | 7 +- docs/_modules/monty/os/path.html | 11 ++-- docs/_modules/monty/pprint.html | 6 +- docs/_modules/monty/re.html | 8 +-- docs/_modules/monty/serialization.html | 6 +- docs/_modules/monty/shutil.html | 4 +- docs/_modules/monty/string.html | 4 +- docs/_modules/monty/subprocess.html | 7 +- docs/_modules/monty/tempfile.html | 5 +- docs/_modules/monty/termcolor.html | 8 +-- docs/_static/documentation_options.js | 2 +- docs/_themes/README.html | 4 +- docs/changelog.html | 12 +++- docs/genindex.html | 8 +-- docs/index.html | 4 +- docs/modules.html | 4 +- docs/monty.bisect.html | 4 +- docs/monty.collections.html | 4 +- docs/monty.design_patterns.html | 4 +- docs/monty.dev.html | 4 +- docs/monty.fnmatch.html | 4 +- docs/monty.fractions.html | 4 +- docs/monty.functools.html | 4 +- docs/monty.html | 4 +- docs/monty.inspect.html | 4 +- docs/monty.io.html | 4 +- docs/monty.itertools.html | 4 +- docs/monty.json.html | 26 ++++---- docs/monty.logging.html | 4 +- docs/monty.math.html | 4 +- docs/monty.msgpack.html | 4 +- docs/monty.multiprocessing.html | 4 +- docs/monty.operator.html | 4 +- docs/monty.os.html | 4 +- docs/monty.os.path.html | 22 +------ docs/monty.pprint.html | 4 +- docs/monty.re.html | 4 +- docs/monty.serialization.html | 4 +- docs/monty.shutil.html | 4 +- docs/monty.string.html | 4 +- docs/monty.subprocess.html | 4 +- docs/monty.tempfile.html | 4 +- docs/monty.termcolor.html | 4 +- docs/objects.inv | Bin 1923 -> 1916 bytes docs/py-modindex.html | 4 +- docs/search.html | 4 +- docs/searchindex.js | 2 +- monty/__init__.py | 2 +- setup.py | 2 +- 66 files changed, 232 insertions(+), 213 deletions(-) diff --git a/docs/_modules/index.html b/docs/_modules/index.html index 58734fb3..3b8567cd 100644 --- a/docs/_modules/index.html +++ b/docs/_modules/index.html @@ -5,7 +5,7 @@ - Overview: module code — monty 2022.1.19 documentation + Overview: module code — monty 2022.3.12 documentation @@ -31,7 +31,7 @@

Navigation

  • modules |
    • -
  • monty 2022.1.19 documentation »
    • +
  • monty 2022.3.12 documentation »
  • Overview: module code
    • diff --git a/docs/_modules/monty/bisect.html b/docs/_modules/monty/bisect.html index 60bd93c2..6152f64d 100644 --- a/docs/_modules/monty/bisect.html +++ b/docs/_modules/monty/bisect.html @@ -5,7 +5,7 @@ - monty.bisect — monty 2022.1.19 documentation + monty.bisect — monty 2022.3.12 documentation @@ -31,7 +31,7 @@

    Navigation

  • modules |
    • -
  • monty 2022.1.19 documentation »
    • +
  • monty 2022.3.12 documentation »
  • Module code »
  • monty.bisect
    • diff --git a/docs/_modules/monty/collections.html b/docs/_modules/monty/collections.html index fcea7db0..7648c818 100644 --- a/docs/_modules/monty/collections.html +++ b/docs/_modules/monty/collections.html @@ -5,7 +5,7 @@ - monty.collections — monty 2022.1.19 documentation + monty.collections — monty 2022.3.12 documentation @@ -31,7 +31,7 @@

    Navigation

  • modules |
    • -
  • monty 2022.1.19 documentation »
    • +
  • monty 2022.3.12 documentation »
  • Module code »
  • monty.collections
    • diff --git a/docs/_modules/monty/design_patterns.html b/docs/_modules/monty/design_patterns.html index 0b2af261..657a6bd4 100644 --- a/docs/_modules/monty/design_patterns.html +++ b/docs/_modules/monty/design_patterns.html @@ -5,7 +5,7 @@ - monty.design_patterns — monty 2022.1.19 documentation + monty.design_patterns — monty 2022.3.12 documentation @@ -31,7 +31,7 @@

    Navigation

  • modules |
    • -
  • monty 2022.1.19 documentation »
    • +
  • monty 2022.3.12 documentation »
  • Module code »
  • monty.design_patterns
    • @@ -160,8 +160,7 @@

    Source code for monty.design_patterns

             """
         Does nothing...
         :param args:
-        """
-        pass
    + """
    diff --git a/docs/_modules/monty/dev.html b/docs/_modules/monty/dev.html index 214a1f7b..ea3fa735 100644 --- a/docs/_modules/monty/dev.html +++ b/docs/_modules/monty/dev.html @@ -5,7 +5,7 @@ - monty.dev — monty 2022.1.19 documentation + monty.dev — monty 2022.3.12 documentation @@ -31,7 +31,7 @@

    Navigation

  • modules |
    • -
  • monty 2022.1.19 documentation »
    • +
  • monty 2022.3.12 documentation »
  • Module code »
  • monty.dev
    • @@ -48,14 +48,14 @@

    Source code for monty.dev

     particularly useful for developers. E.g., deprecating methods / classes, etc.
 """
 
-import re
-import sys
+import functools
 import logging
-import warnings
+import multiprocessing
 import os
+import re
 import subprocess
-import multiprocessing
-import functools
+import sys
+import warnings
 
 logger = logging.getLogger(__name__)
 
diff --git a/docs/_modules/monty/fnmatch.html b/docs/_modules/monty/fnmatch.html
index 69e89bd9..c91b74a2 100644
--- a/docs/_modules/monty/fnmatch.html
+++ b/docs/_modules/monty/fnmatch.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.fnmatch — monty 2022.1.19 documentation
+    monty.fnmatch — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.fnmatch
    •  
       
diff --git a/docs/_modules/monty/fractions.html b/docs/_modules/monty/fractions.html
index a29ae91d..de7fbdb4 100644
--- a/docs/_modules/monty/fractions.html
+++ b/docs/_modules/monty/fractions.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.fractions — monty 2022.1.19 documentation
+    monty.fractions — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.fractions
    •  
       
diff --git a/docs/_modules/monty/functools.html b/docs/_modules/monty/functools.html
index 674dfd35..98bcff42 100644
--- a/docs/_modules/monty/functools.html
+++ b/docs/_modules/monty/functools.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.functools — monty 2022.1.19 documentation
+    monty.functools — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.functools
    •  
       
@@ -47,13 +47,13 @@ 
    Source code for monty.functools
     functools, especially backported from Python 3.
 """
 
-import signal
-import sys
 import cProfile
 import pstats
+import signal
+import sys
 import tempfile
 from collections import namedtuple
-from functools import update_wrapper, wraps, partial
+from functools import partial, update_wrapper, wraps
 from threading import RLock
 
 _CacheInfo = namedtuple("_CacheInfo", ["hits", "misses", "maxsize", "currsize"])
diff --git a/docs/_modules/monty/inspect.html b/docs/_modules/monty/inspect.html
index 435bff97..3a29c66b 100644
--- a/docs/_modules/monty/inspect.html
+++ b/docs/_modules/monty/inspect.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.inspect — monty 2022.1.19 documentation
+    monty.inspect — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.inspect
    •  
       
@@ -47,10 +47,10 @@ 
    Source code for monty.inspect
     Useful additional functions to help get information about live objects
 """
 
-import os
 import inspect
-from inspect import currentframe, getframeinfo, getfullargspec
+import os
 from functools import wraps
+from inspect import currentframe, getframeinfo, getfullargspec
 
 
 
    [docs]def all_subclasses(cls):
diff --git a/docs/_modules/monty/io.html b/docs/_modules/monty/io.html
index f2951aa5..11123f04 100644
--- a/docs/_modules/monty/io.html
+++ b/docs/_modules/monty/io.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.io — monty 2022.1.19 documentation
+    monty.io — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.io
    •  
       
@@ -48,17 +48,17 @@ 
    Source code for monty.io
     compressed files.
 """
 
-import os
 import bz2
+import errno
 import gzip
+import io
 import lzma
-import time
-import errno
 import mmap
+import os
 import subprocess
-import io
-from typing import Union, IO, Generator
+import time
 from pathlib import Path
+from typing import IO, Generator, Union
 
 
 
    [docs]def zopen(filename: Union[str, Path], *args, **kwargs) -> IO:
diff --git a/docs/_modules/monty/itertools.html b/docs/_modules/monty/itertools.html
index 139478ec..3cfd32db 100644
--- a/docs/_modules/monty/itertools.html
+++ b/docs/_modules/monty/itertools.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.itertools — monty 2022.1.19 documentation
+    monty.itertools — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.itertools
    •  
       
diff --git a/docs/_modules/monty/json.html b/docs/_modules/monty/json.html
index a329cf0f..59182099 100644
--- a/docs/_modules/monty/json.html
+++ b/docs/_modules/monty/json.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.json — monty 2022.1.19 documentation
+    monty.json — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.json
    •  
       
@@ -47,17 +47,14 @@ 
    Source code for monty.json
     JSON serialization and deserialization utilities.
 """
 
-import os
+import datetime
 import json
+import os
 import types
-import datetime
-
-from hashlib import sha1
 from collections import OrderedDict, defaultdict
 from enum import Enum
-
+from hashlib import sha1
 from importlib import import_module
-
 from inspect import getfullargspec
 from uuid import UUID
 
@@ -86,6 +83,11 @@ 
    Source code for monty.json
     except ImportError:
     YAML = None  # type: ignore
 
+try:
+    import orjson
+except ImportError:
+    orjson = None  # type: ignore
+
 __version__ = "3.0.0"
 
 
@@ -296,9 +298,7 @@ 
    Source code for monty.json
         """
     A Json Encoder which supports the MSONable API, plus adds support for
     numpy arrays, datetime objects, bson ObjectIds (requires bson).
-
     Usage::
-
         # Add it as a *cls* keyword when using json.dump
         json.dumps(object, cls=MontyEncoder)
     """
@@ -310,10 +310,8 @@ 
    Source code for monty.json
             output. (b) If the @module and @class keys are not in the to_dict,
         add them to the output automatically. If the object has no to_dict
         property, the default Python json encoder default method is called.
-
         Args:
             o: Python object.
-
         Return:
             Python dict representation.
         """
@@ -347,6 +345,12 @@ 
    Source code for monty.json
                         "@class": "DataFrame",
                     "data": o.to_json(default_handler=MontyEncoder().encode),
                 }
+            if isinstance(o, pd.Series):
+                return {
+                    "@module": "pandas",
+                    "@class": "Series",
+                    "data": o.to_json(default_handler=MontyEncoder().encode),
+                }
 
         if bson is not None:
             if isinstance(o, bson.objectid.ObjectId):
@@ -461,9 +465,13 @@ 
    Source code for monty.json
                                 dtype=d["dtype"],
                         )
                     return np.array(d["data"], dtype=d["dtype"])
-                elif pd is not None and modname == "pandas" and classname == "DataFrame":
-                    decoded_data = MontyDecoder().decode(d["data"])
-                    return pd.DataFrame(decoded_data)
+                elif pd is not None and modname == "pandas":
+                    if classname == "DataFrame":
+                        decoded_data = MontyDecoder().decode(d["data"])
+                        return pd.DataFrame(decoded_data)
+                    if classname == "Series":
+                        decoded_data = MontyDecoder().decode(d["data"])
+                        return pd.Series(decoded_data)
                 elif (bson is not None) and modname == "bson.objectid" and classname == "ObjectId":
                     return bson.objectid.ObjectId(d["oid"])
 
@@ -481,7 +489,10 @@ 
    Source code for monty.json
             :param s: string
         :return: Object.
         """
-        d = json.JSONDecoder.decode(self, s)
+        if orjson is not None:
+            d = orjson.loads(s)  # pylint: disable=E1101
+        else:
+            d = json.loads(s)
         return self.process_decoded(d)
    
 
 
@@ -491,7 +502,7 @@ 
    Source code for monty.json
         """
    
 
 
-
    [docs]def jsanitize(obj, strict=False, allow_bson=False, enum_values=False):
+
    [docs]def jsanitize(obj, strict=False, allow_bson=False, enum_values=False, recursive_msonable=False):
     """
     This method cleans an input json-like object, either a list or a dict or
     some sequence, nested or otherwise, by converting all non-string
@@ -507,10 +518,12 @@ 
    Source code for monty.json
                 strict is False, jsanitize will simply call str(object) to convert
             the object to a string representation.
         allow_bson (bool): This parameters sets the behavior when jsanitize
-            encounters an bson supported type such as objectid and datetime. If
+            encounters a bson supported type such as objectid and datetime. If
             True, such bson types will be ignored, allowing for proper
-            insertion into MongoDb databases.
+            insertion into MongoDB databases.
         enum_values (bool): Convert Enums to their values.
+        recursive_msonable (bool): If True, uses .as_dict() for MSONables regardless
+            of the value of strict.
 
     Returns:
         Sanitized dict that can be json serialized.
@@ -528,9 +541,13 @@ 
    Source code for monty.json
             return [jsanitize(i, strict=strict, allow_bson=allow_bson, enum_values=enum_values) for i in obj.tolist()]
     if np is not None and isinstance(obj, np.generic):
         return obj.item()
+    if pd is not None and isinstance(obj, pd.DataFrame) or isinstance(obj, pd.Series):
+        return obj.to_dict()
     if isinstance(obj, dict):
         return {
-            k.__str__(): jsanitize(v, strict=strict, allow_bson=allow_bson, enum_values=enum_values)
+            k.__str__(): jsanitize(
+                v, strict=strict, allow_bson=allow_bson, enum_values=enum_values, recursive_msonable=recursive_msonable
+            )
             for k, v in obj.items()
         }
     if isinstance(obj, (int, float)):
@@ -544,6 +561,9 @@ 
    Source code for monty.json
             except TypeError:
             pass
 
+    if recursive_msonable and isinstance(obj, MSONable):
+        return obj.as_dict()
+
     if not strict:
         return obj.__str__()
 
@@ -551,9 +571,21 @@ 
    Source code for monty.json
             return obj.__str__()
 
     if pydantic is not None and isinstance(obj, pydantic.BaseModel):
-        return jsanitize(MontyEncoder().default(obj), strict=strict, allow_bson=allow_bson, enum_values=enum_values)
-
-    return jsanitize(obj.as_dict(), strict=strict, allow_bson=allow_bson, enum_values=enum_values)
    
+        return jsanitize(
+            MontyEncoder().default(obj),
+            strict=strict,
+            allow_bson=allow_bson,
+            enum_values=enum_values,
+            recursive_msonable=recursive_msonable,
+        )
+
+    return jsanitize(
+        obj.as_dict(),
+        strict=strict,
+        allow_bson=allow_bson,
+        enum_values=enum_values,
+        recursive_msonable=recursive_msonable,
+    )
    
 
 
 def _serialize_callable(o):
diff --git a/docs/_modules/monty/logging.html b/docs/_modules/monty/logging.html
index 7f8e0ed9..06260332 100644
--- a/docs/_modules/monty/logging.html
+++ b/docs/_modules/monty/logging.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.logging — monty 2022.1.19 documentation
+    monty.logging — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.logging
    •  
       
@@ -49,10 +49,10 @@ 
    Source code for monty.logging
     Logging tools
 """
 
-import logging
+import argparse
 import datetime
 import functools
-import argparse
+import logging
 
 logger = logging.getLogger(__name__)
 
diff --git a/docs/_modules/monty/math.html b/docs/_modules/monty/math.html
index bdc470ee..667e3f1b 100644
--- a/docs/_modules/monty/math.html
+++ b/docs/_modules/monty/math.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.math — monty 2022.1.19 documentation
+    monty.math — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.math
    •  
       
diff --git a/docs/_modules/monty/msgpack.html b/docs/_modules/monty/msgpack.html
index fe857ac8..2d4acaa2 100644
--- a/docs/_modules/monty/msgpack.html
+++ b/docs/_modules/monty/msgpack.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.msgpack — monty 2022.1.19 documentation
+    monty.msgpack — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.msgpack
    •  
       
@@ -49,7 +49,7 @@ 
    Source code for monty.msgpack
     msgpack's default and object_hook naming.
 """
 
-from monty.json import MontyEncoder, MontyDecoder
+from monty.json import MontyDecoder, MontyEncoder
 
 
 
    [docs]def default(obj):
diff --git a/docs/_modules/monty/multiprocessing.html b/docs/_modules/monty/multiprocessing.html
index fd9a4ab3..ec7c17d1 100644
--- a/docs/_modules/monty/multiprocessing.html
+++ b/docs/_modules/monty/multiprocessing.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.multiprocessing — monty 2022.1.19 documentation
+    monty.multiprocessing — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.multiprocessing
    •  
       
@@ -48,7 +48,7 @@ 
    Source code for monty.multiprocessing
     """
 
 from multiprocessing import Pool
-from typing import Iterable, Callable
+from typing import Callable, Iterable
 
 try:
     from tqdm.autonotebook import tqdm
diff --git a/docs/_modules/monty/operator.html b/docs/_modules/monty/operator.html
index 17c4ae6b..c01f2334 100644
--- a/docs/_modules/monty/operator.html
+++ b/docs/_modules/monty/operator.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.operator — monty 2022.1.19 documentation
+    monty.operator — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.operator
    •  
       
diff --git a/docs/_modules/monty/os.html b/docs/_modules/monty/os.html
index 38834ec1..5b8ef21e 100644
--- a/docs/_modules/monty/os.html
+++ b/docs/_modules/monty/os.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.os — monty 2022.1.19 documentation
+    monty.os — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
         
  • monty.os
    •  
       
@@ -47,9 +47,8 @@ 
    Source code for monty.os
     Os functions, e.g., cd, makedirs_p.
 """
 
-import os
 import errno
-
+import os
 from contextlib import contextmanager
 
 __author__ = "Shyue Ping Ong"
diff --git a/docs/_modules/monty/os/path.html b/docs/_modules/monty/os/path.html
index eceaa1ff..262d2fe6 100644
--- a/docs/_modules/monty/os/path.html
+++ b/docs/_modules/monty/os/path.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.os.path — monty 2022.1.19 documentation
+    monty.os.path — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
    • 
           
  • Module code »
    • 
           
  • monty.os »
    • 
         
  • monty.os.path
    •  
@@ -48,12 +48,15 @@ 
    Source code for monty.os.path
     Path based methods, e.g., which, zpath, etc.
 """
 import os
+import shutil
 
+from monty.dev import deprecated
 from monty.fnmatch import WildCard
 from monty.string import list_strings
 
 
-
    [docs]def which(cmd):
+@deprecated(shutil.which, message="shutil.which has been available since Python 3.3. This will be removed in v2023.")
+def which(cmd):
     """
     Returns full path to a executable.
 
@@ -80,7 +83,7 @@ 
    Source code for monty.os.path
                 exe_file = os.path.join(path, cmd)
             if is_exe(exe_file):
                 return exe_file
-    return None
    
+    return None
 
 
 
    [docs]def zpath(filename):
diff --git a/docs/_modules/monty/pprint.html b/docs/_modules/monty/pprint.html
index 4c83c710..7695c6b3 100644
--- a/docs/_modules/monty/pprint.html
+++ b/docs/_modules/monty/pprint.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.pprint — monty 2022.1.19 documentation
+    monty.pprint — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
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+        
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  • Module code »
    • 
         
  • monty.pprint
    •  
       
@@ -47,8 +47,8 @@ 
    Source code for monty.pprint
     Pretty printing functions.
 """
 
-from io import StringIO
 import sys
+from io import StringIO
 from json import JSONEncoder, loads
 
 
diff --git a/docs/_modules/monty/re.html b/docs/_modules/monty/re.html
index c8528098..c33c3ff0 100644
--- a/docs/_modules/monty/re.html
+++ b/docs/_modules/monty/re.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.re — monty 2022.1.19 documentation
+    monty.re — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
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-        
  • monty 2022.1.19 documentation »
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+        
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  • Module code »
    • 
         
  • monty.re
    •  
       
@@ -47,10 +47,10 @@ 
    Source code for monty.re
     Helpful regex based functions. E.g., grepping.
 """
 
-import re
 import collections
+import re
 
-from monty.io import zopen, reverse_readfile
+from monty.io import reverse_readfile, zopen
 
 
 
    [docs]def regrep(filename, patterns, reverse=False, terminate_on_match=False, postprocess=str):
diff --git a/docs/_modules/monty/serialization.html b/docs/_modules/monty/serialization.html
index 7292cb2b..2abff2a6 100644
--- a/docs/_modules/monty/serialization.html
+++ b/docs/_modules/monty/serialization.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.serialization — monty 2022.1.19 documentation
+    monty.serialization — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
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-        
  • monty 2022.1.19 documentation »
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+        
  • monty 2022.3.12 documentation »
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  • Module code »
    • 
         
  • monty.serialization
    •  
       
@@ -56,7 +56,7 @@ 
    Source code for monty.serialization
         YAML = None  # type: ignore
 
 from monty.io import zopen
-from monty.json import MontyEncoder, MontyDecoder
+from monty.json import MontyDecoder, MontyEncoder
 from monty.msgpack import default, object_hook
 
 try:
diff --git a/docs/_modules/monty/shutil.html b/docs/_modules/monty/shutil.html
index 58aca753..9385dd85 100644
--- a/docs/_modules/monty/shutil.html
+++ b/docs/_modules/monty/shutil.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.shutil — monty 2022.1.19 documentation
+    monty.shutil — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
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+        
  • monty 2022.3.12 documentation »
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  • Module code »
    • 
         
  • monty.shutil
    •  
       
diff --git a/docs/_modules/monty/string.html b/docs/_modules/monty/string.html
index 0cf55775..73928521 100644
--- a/docs/_modules/monty/string.html
+++ b/docs/_modules/monty/string.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.string — monty 2022.1.19 documentation
+    monty.string — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
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  • 
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-        
  • monty 2022.1.19 documentation »
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  • monty.string
    •  
       
diff --git a/docs/_modules/monty/subprocess.html b/docs/_modules/monty/subprocess.html
index a00084bd..63095908 100644
--- a/docs/_modules/monty/subprocess.html
+++ b/docs/_modules/monty/subprocess.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.subprocess — monty 2022.1.19 documentation
+    monty.subprocess — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
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-        
  • monty 2022.1.19 documentation »
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+        
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  • Module code »
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  • monty.subprocess
    •  
       
@@ -49,11 +49,10 @@ 
    Source code for monty.subprocess
     import shlex
 import threading
 import traceback
-from subprocess import Popen, PIPE
+from subprocess import PIPE, Popen
 
 from .string import is_string
 
-
 __author__ = "Matteo Giantomass"
 __copyright__ = "Copyright 2014, The Materials Virtual Lab"
 __version__ = "0.1"
diff --git a/docs/_modules/monty/tempfile.html b/docs/_modules/monty/tempfile.html
index a320122a..d4d9a807 100644
--- a/docs/_modules/monty/tempfile.html
+++ b/docs/_modules/monty/tempfile.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.tempfile — monty 2022.1.19 documentation
+    monty.tempfile — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
    • 
+        
  • monty 2022.3.12 documentation »
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  • Module code »
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  • monty.tempfile
    •  
       
@@ -49,7 +49,6 @@ 
    Source code for monty.tempfile
     
 import os
 import tempfile
-
 from pathlib import Path
 
 from monty.shutil import copy_r, remove
diff --git a/docs/_modules/monty/termcolor.html b/docs/_modules/monty/termcolor.html
index 92bc29d4..c5a06d2e 100644
--- a/docs/_modules/monty/termcolor.html
+++ b/docs/_modules/monty/termcolor.html
@@ -5,7 +5,7 @@
   
     
     
-    monty.termcolor — monty 2022.1.19 documentation
+    monty.termcolor — monty 2022.3.12 documentation
     
     
     
@@ -31,7 +31,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
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  • Module code »
    • 
         
  • monty.termcolor
    •  
       
@@ -71,10 +71,10 @@ 
    Source code for monty.termcolor
     import os
 
 try:
+    import curses
     import fcntl
-    import termios
     import struct
-    import curses
+    import termios
 except Exception:
     pass
 
diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
index 90d6e3c5..f0f3d5b5 100644
--- a/docs/_static/documentation_options.js
+++ b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '2022.1.19',
+    VERSION: '2022.3.12',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',
diff --git a/docs/_themes/README.html b/docs/_themes/README.html
index b22196f3..7b4dbe6a 100644
--- a/docs/_themes/README.html
+++ b/docs/_themes/README.html
@@ -6,7 +6,7 @@
     
     
 
-    krTheme Sphinx Style — monty 2022.1.19 documentation
+    krTheme Sphinx Style — monty 2022.3.12 documentation
     
     
     
@@ -32,7 +32,7 @@ 
    Navigation
    
         
  • 
           modules |
    • 
-        
  • monty 2022.1.19 documentation »
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  • krTheme Sphinx Style
    •  
       
     
      
diff --git a/docs/changelog.html b/docs/changelog.html
index ed03354a..438610a9 100644
--- a/docs/changelog.html
+++ b/docs/changelog.html
@@ -6,7 +6,7 @@
     
     
 
-    Change log — monty 2022.1.19 documentation
+    Change log — monty 2022.3.12 documentation
     
     
     
@@ -32,7 +32,7 @@ 
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  • Change log
    •  
       
     
      
@@ -44,6 +44,13 @@ 
    Navigation
    
             
   
    
 
    Change log¶
    
+
    
+
    v2022.3.12¶
    
+
      
+
    • Allow recursive MSON in jsanitize (@arosen93)
      • 
+
    • Option to use orjson for faster decoding. (@munrojm)
      • 
+
    
+
    
 
    
 
    v2022.1.19¶
    
 
      
@@ -705,12 +705,10 @@ 
    V
    
 
    W
    
 
diff --git a/docs/index.html b/docs/index.html
index c97bcc53..6d2b7eab 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -6,7 +6,7 @@
     
 
-    Monty: Python Made Even Easier — monty 2022.1.19 documentation
+    Monty: Python Made Even Easier — monty 2022.3.12 documentation
@@ -36,7 +36,7 @@ 
    Navigation
  • 
           next |
    • 
-        
  • monty 2022.1.19 documentation »
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+        
  • monty 2022.3.12 documentation »
  • Monty: Python Made Even Easier
    •   
diff --git a/docs/modules.html b/docs/modules.html
index 7f42b96a..4ccaba13 100644
--- a/docs/modules.html
+++ b/docs/modules.html
@@ -6,7 +6,7 @@
     
 
-    monty — monty 2022.1.19 documentation
+    monty — monty 2022.3.12 documentation
@@ -32,7 +32,7 @@ 
    Navigation
  • 
           modules |
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  • monty 2022.1.19 documentation »
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  • monty
    •   
diff --git a/docs/monty.bisect.html b/docs/monty.bisect.html
index 23e802d6..9bbe6f31 100644
--- a/docs/monty.bisect.html
+++ b/docs/monty.bisect.html
@@ -6,7 +6,7 @@
     
 
-    monty.bisect module — monty 2022.1.19 documentation
+    monty.bisect module — monty 2022.3.12 documentation
@@ -40,7 +40,7 @@ 
    Navigation
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  • monty 2022.1.19 documentation »
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  • monty package »
  • monty.bisect module
    • 
diff --git a/docs/monty.collections.html b/docs/monty.collections.html
index 5a90159c..c433331c 100644
--- a/docs/monty.collections.html
+++ b/docs/monty.collections.html
@@ -6,7 +6,7 @@
     
 
-    monty.collections module — monty 2022.1.19 documentation
+    monty.collections module — monty 2022.3.12 documentation
@@ -40,7 +40,7 @@ 
    Navigation
  • 
           previous |
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-        
  • monty 2022.1.19 documentation »
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  • monty package »
  • monty.collections module
    • 
diff --git a/docs/monty.design_patterns.html b/docs/monty.design_patterns.html
index 2d64cd4a..a71372c1 100644
--- a/docs/monty.design_patterns.html
+++ b/docs/monty.design_patterns.html
@@ -6,7 +6,7 @@
     
 
-    monty.design_patterns module — monty 2022.1.19 documentation
+    monty.design_patterns module — monty 2022.3.12 documentation
@@ -40,7 +40,7 @@ 
    Navigation
  • 
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-        
  • monty 2022.1.19 documentation »
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  • monty package »
  • monty.design_patterns module
    • 
diff --git a/docs/monty.dev.html b/docs/monty.dev.html
index 1aedd499..5615848d 100644
--- a/docs/monty.dev.html
+++ b/docs/monty.dev.html
@@ -6,7 +6,7 @@
     
 
-    monty.dev module — monty 2022.1.19 documentation
+    monty.dev module — monty 2022.3.12 documentation
@@ -40,7 +40,7 @@ 
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    • 
-        
  • monty 2022.1.19 documentation »
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  • monty.dev module
    • 
diff --git a/docs/monty.fnmatch.html b/docs/monty.fnmatch.html
index db05bdbe..3b2b2931 100644
--- a/docs/monty.fnmatch.html
+++ b/docs/monty.fnmatch.html
@@ -6,7 +6,7 @@
     
 
-    monty.fnmatch module — monty 2022.1.19 documentation
+    monty.fnmatch module — monty 2022.3.12 documentation
@@ -40,7 +40,7 @@ 
    Navigation
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  • monty 2022.1.19 documentation »
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  • monty.fnmatch module
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diff --git a/docs/monty.fractions.html b/docs/monty.fractions.html
index fbfff96e..095ce870 100644
--- a/docs/monty.fractions.html
+++ b/docs/monty.fractions.html
@@ -6,7 +6,7 @@
     
 
-    monty.fractions module — monty 2022.1.19 documentation
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@@ -40,7 +40,7 @@ 
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  • monty.fractions module
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diff --git a/docs/monty.functools.html b/docs/monty.functools.html
index eeeca404..5cd20a74 100644
--- a/docs/monty.functools.html
+++ b/docs/monty.functools.html
@@ -6,7 +6,7 @@
     
 
-    monty.functools module — monty 2022.1.19 documentation
+    monty.functools module — monty 2022.3.12 documentation
@@ -40,7 +40,7 @@ 
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  • monty.functools module
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diff --git a/docs/monty.html b/docs/monty.html
index 8429208a..7a78b999 100644
--- a/docs/monty.html
+++ b/docs/monty.html
@@ -6,7 +6,7 @@
     
 
-    monty package — monty 2022.1.19 documentation
+    monty package — monty 2022.3.12 documentation
@@ -40,7 +40,7 @@ 
    Navigation
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    • 
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  • monty 2022.1.19 documentation »
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  • monty package
    •   
diff --git a/docs/monty.inspect.html b/docs/monty.inspect.html
index 415d7791..a1a55a74 100644
--- a/docs/monty.inspect.html
+++ b/docs/monty.inspect.html
@@ -6,7 +6,7 @@
     
 
-    monty.inspect module — monty 2022.1.19 documentation
+    monty.inspect module — monty 2022.3.12 documentation
@@ -40,7 +40,7 @@ 
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  • monty.inspect module
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diff --git a/docs/monty.io.html b/docs/monty.io.html
index ee9855b7..279dd4bd 100644
--- a/docs/monty.io.html
+++ b/docs/monty.io.html
@@ -6,7 +6,7 @@
     
 
-    monty.io module — monty 2022.1.19 documentation
+    monty.io module — monty 2022.3.12 documentation
@@ -40,7 +40,7 @@ 
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    • 
diff --git a/docs/monty.itertools.html b/docs/monty.itertools.html
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--- a/docs/monty.itertools.html
+++ b/docs/monty.itertools.html
@@ -6,7 +6,7 @@
     
 
-    monty.itertools module — monty 2022.1.19 documentation
+    monty.itertools module — monty 2022.3.12 documentation
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diff --git a/docs/monty.json.html b/docs/monty.json.html
index e4d290b7..7b3ac878 100644
--- a/docs/monty.json.html
+++ b/docs/monty.json.html
@@ -6,7 +6,7 @@
     
 
-    monty.json module — monty 2022.1.19 documentation
+    monty.json module — monty 2022.3.12 documentation
@@ -40,7 +40,7 @@ 
    Navigation
  • 
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    • 
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  • monty.json module
    • 
@@ -215,8 +215,8 @@ 
    Navigation
    class MontyEncoder(*, skipkeys=False, ensure_ascii=True, check_circular=True, allow_nan=True, sort_keys=False, indent=None, separators=None, default=None)[source]¶
    Bases: json.encoder.JSONEncoder
    
 
    A Json Encoder which supports the MSONable API, plus adds support for
-numpy arrays, datetime objects, bson ObjectIds (requires bson).
    
-
    Usage:
    
+numpy arrays, datetime objects, bson ObjectIds (requires bson).
+Usage:
    
 
    # Add it as a *cls* keyword when using json.dump
 json.dumps(object, cls=MontyEncoder)
 
    
@@ -257,13 +257,11 @@ 
    Navigation
    
 things: (a) If an object has a to_dict property, return the to_dict
 output. (b) If the @module and @class keys are not in the to_dict,
 add them to the output automatically. If the object has no to_dict
-property, the default Python json encoder default method is called.
    
+property, the default Python json encoder default method is called.
+:param o: Python object.
    
 
    
-
    Parameters
    
-
    o – Python object.
    
-
    
-
    Returns
    
-
    Python dict representation.
    
+
    Returns
    
+
    Python dict representation.
    
 
    
 
    
 
    
@@ -272,7 +270,7 @@ 
    Navigation
    
 
    
-jsanitize(obj, strict=False, allow_bson=False, enum_values=False)[source]¶
    
+jsanitize(obj, strict=False, allow_bson=False, enum_values=False, recursive_msonable=False)[source]¶
 
    This method cleans an input json-like object, either a list or a dict or
 some sequence, nested or otherwise, by converting all non-string
 dictionary keys (such as int and float) to strings, and also recursively
@@ -288,10 +286,12 @@ 
    Navigation
    
 strict is False, jsanitize will simply call str(object) to convert
 the object to a string representation.
    
 
  • allow_bson (bool) – This parameters sets the behavior when jsanitize
-encounters an bson supported type such as objectid and datetime. If
+encounters a bson supported type such as objectid and datetime. If
 True, such bson types will be ignored, allowing for proper
-insertion into MongoDb databases.
    • 
+insertion into MongoDB databases.
    
 
  • enum_values (bool) – Convert Enums to their values.
    • 
+
  • recursive_msonable (bool) – If True, uses .as_dict() for MSONables regardless
+of the value of strict.
    • 
 
 
    
 
    Returns
    
diff --git a/docs/monty.logging.html b/docs/monty.logging.html
index 7395fc00..3e7490f6 100644
--- a/docs/monty.logging.html
+++ b/docs/monty.logging.html
@@ -6,7 +6,7 @@
     
     
 
-    monty.logging module — monty 2022.1.19 documentation
+    monty.logging module — monty 2022.3.12 documentation
     
     
     
@@ -40,7 +40,7 @@ 
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    •  
       
diff --git a/docs/monty.math.html b/docs/monty.math.html
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+++ b/docs/monty.math.html
@@ -6,7 +6,7 @@
     
     
 
-    monty.math module — monty 2022.1.19 documentation
+    monty.math module — monty 2022.3.12 documentation
     
     
     
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--- a/docs/monty.msgpack.html
+++ b/docs/monty.msgpack.html
@@ -6,7 +6,7 @@
     
     
 
-    monty.msgpack module — monty 2022.1.19 documentation
+    monty.msgpack module — monty 2022.3.12 documentation
     
     
     
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Sphinx Style","Change log","Monty: Python Made Even Easier","monty","monty package","monty.bisect module","monty.collections module","monty.design_patterns module","monty.dev module","monty.fnmatch module","monty.fractions module","monty.functools module","monty.inspect module","monty.io module","monty.itertools module","monty.json module","monty.logging module","monty.math module","monty.msgpack module","monty.multiprocessing module","monty.operator module","monty.os package","monty.os.path module","monty.pprint module","monty.re module","monty.serialization module","monty.shutil module","monty.string module","monty.subprocess module","monty.tempfile module","monty.termcolor 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\ No newline at end of file
diff --git a/monty/__init__.py b/monty/__init__.py
index 23b65866..8cf85a19 100644
--- a/monty/__init__.py
+++ b/monty/__init__.py
@@ -7,7 +7,7 @@
 
 __author__ = "Shyue Ping Ong"
 __copyright__ = "Copyright 2014, The Materials Virtual Lab"
-__version__ = "2022.1.19"
+__version__ = "2022.3.12"
 __maintainer__ = "Shyue Ping Ong"
 __email__ = "ongsp@ucsd.edu"
 __date__ = "Oct 12 2020"
diff --git a/setup.py b/setup.py
index c12e7a59..615a1784 100644
--- a/setup.py
+++ b/setup.py
@@ -10,7 +10,7 @@
 setup(
     name="monty",
     packages=find_packages(),
-    version="2022.1.19",
+    version="2022.3.12",
     extras_require={
         "yaml": ["ruamel.yaml"],
     },