From dbed8e757ff20360fed90c0a7324ccdc79b7c6aa Mon Sep 17 00:00:00 2001
From: malonge <malonge11@gmail.com>
Date: Tue, 18 May 2021 09:05:47 -0400
Subject: [PATCH] updated tests

---
 ragtag_merge.py                                    | 2 ++
 tests/integration_tests/scripts/validate_agp_eq.sh | 4 ++--
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/ragtag_merge.py b/ragtag_merge.py
index 9a3f7fb..d28a842 100644
--- a/ragtag_merge.py
+++ b/ragtag_merge.py
@@ -423,6 +423,8 @@ def main():
     ]
     run_oae(cmd, output_path + file_prefix + ".fasta", merge_log)
 
+    log("INFO", "Goodbye")
+
 
 if __name__ == "__main__":
     main()
diff --git a/tests/integration_tests/scripts/validate_agp_eq.sh b/tests/integration_tests/scripts/validate_agp_eq.sh
index b7239d1..f903385 100644
--- a/tests/integration_tests/scripts/validate_agp_eq.sh
+++ b/tests/integration_tests/scripts/validate_agp_eq.sh
@@ -26,12 +26,12 @@ AGP1=$2
 AGP2=$3
 
 # Prep the objects for the first AGP file
-ragtag.py agp2fasta $AGP1 $ASM > 1.fasta
+ragtag.py agp2fa $AGP1 $ASM > 1.fasta
 python3 scripts/choose_strand.py 1.fasta > 1.s.fasta
 grep -v ">"  1.s.fasta | sort > 1.seq
 
 # Prep the objects for the second AGP file
-ragtag.py agp2fasta $AGP2 $ASM > 2.fasta
+ragtag.py agp2fa $AGP2 $ASM > 2.fasta
 python3 scripts/choose_strand.py 2.fasta > 2.s.fasta
 grep -v ">"  2.s.fasta | sort > 2.seq