From 5ace95bb1dc67c40fa7d0e12c5b9c3834bafcbaf Mon Sep 17 00:00:00 2001 From: malonge Date: Tue, 18 May 2021 17:57:21 -0400 Subject: [PATCH] updated readme --- README.md | 7 +- logo/descriptive_diagram.svg | 148 +++++++++++++++++++++++++++++++++++ 2 files changed, 152 insertions(+), 3 deletions(-) create mode 100644 logo/descriptive_diagram.svg diff --git a/README.md b/README.md index c033736..70e482b 100644 --- a/README.md +++ b/README.md @@ -4,15 +4,16 @@ [![DOI](https://zenodo.org/badge/242898323.svg)](https://zenodo.org/badge/latestdoi/242898323) [![RELEASE](https://img.shields.io/github/v/release/malonge/RagTag?color=EE7733)](https://github.com/malonge/RagTag/releases/tag/v2.0.0) [![CONDA](https://img.shields.io/conda/dn/bioconda/ragtag?color=009988&label=conda)](https://anaconda.org/bioconda/ragtag) [![GitHub](https://img.shields.io/github/license/malonge/RagTag?color=CC3311)](https://github.com/malonge/RagTag/blob/master/LICENSE) -RagTag is a collection of tools for scaffolding and improving modern genome assemblies. Tasks include: +RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include: - Homology-based misassembly [correction](https://github.com/malonge/RagTag/wiki/correct) -- Homology-based assembly [scaffolding](https://github.com/malonge/RagTag/wiki/scaffold) -- Homology-based continuous scaffolding and gap-filling ([patching](https://github.com/malonge/RagTag/wiki/patch)) +- Homology-based assembly [scaffolding](https://github.com/malonge/RagTag/wiki/scaffold) and [patching](https://github.com/malonge/RagTag/wiki/patch) - Scaffold [merging](https://github.com/malonge/RagTag/wiki/merge) Ragtag also provides [command line utilities](https://github.com/malonge/RagTag/wiki/Usage) for working with common genome assembly file formats. +![logo_text](logo/descriptive_diagram.svg) + ## Getting Started ```bash diff --git a/logo/descriptive_diagram.svg b/logo/descriptive_diagram.svg new file mode 100644 index 0000000..65ca548 --- /dev/null +++ b/logo/descriptive_diagram.svg @@ -0,0 +1,148 @@ + + + + + + + + +scaffold +patch + + + + + + + + + + + + + + + + + + NNN + NNN + query + reference + + + + + + + + + + + + + + + + + + + + + + + + + query + reference + + + + + + + + + + + + + target + query + +correct +merge + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + map 1 + map 2 + +