From 60b0e7faca22cdf8222ea3213f9753431985e464 Mon Sep 17 00:00:00 2001
From: Kevin Dunnicliffe <kevin.dunnicliffe@congenica.com>
Date: Fri, 1 Nov 2019 09:50:44 +0000
Subject: [PATCH] SAP-11534 : improve clnghvs handling by fallback to
 MeasureSet.name

---
 src/parse_clinvar_xml.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/parse_clinvar_xml.py b/src/parse_clinvar_xml.py
index f58ba46..89f3d49 100755
--- a/src/parse_clinvar_xml.py
+++ b/src/parse_clinvar_xml.py
@@ -313,7 +313,7 @@ def parse_clinvar_tree(handle, dest=sys.stdout, multi=None, verbose=True, genome
                 # find hgvs_c
                 if (attribute_type == 'HGVS, coding, RefSeq' and "c." in attribute_value):
                     current_row['clnhgvs'] = attribute_value
-                else:
+                elif "c." in var_name:
                     current_row['clnhgvs'] = var_name
 
                 # find hgvs_p