diff --git a/docs/TROUBLESHOOTING.md b/docs/TROUBLESHOOTING.md index 05d719b..624f71a 100644 --- a/docs/TROUBLESHOOTING.md +++ b/docs/TROUBLESHOOTING.md @@ -7,9 +7,7 @@ Here are some general tips for when things go wrong. ### Read integrity Your reads might be badly formatted or the number of reads might be too low. -~For validating read format, the github version of Mashtree comes bundled -with [ROSS](https://github.com/lskatz/ross) which has a read validator.~ You can optionally download -ROSS and run it separately. -Then, run `friends_ross.pl --help` and follow instructions on how to check -each read set. +You can optionally download [Fasten](https://github.com/lskatz/fasten) and install it separately. +Then, run `fasten_validate --help` or `fasten_inspect --help` +and follow instructions on how to check each read set. diff --git a/lib/Mashtree.pm b/lib/Mashtree.pm index c08fad7..ac0f22a 100644 --- a/lib/Mashtree.pm +++ b/lib/Mashtree.pm @@ -86,7 +86,7 @@ Used to mark whether a file is being read, so that Mashtree limits disk I/O ###### # CONSTANTS -our $VERSION = "1.4.5"; +our $VERSION = "1.4.6"; our $MASHTREE_VERSION=$VERSION; our @fastqExt=qw(.fastq.gz .fastq .fq .fq.gz); our @fastaExt=qw(.fasta .fna .faa .mfa .fas .fsa .fa);