singularity.recipe

Bootstrap: docker
From: ubuntu:18.04

%post
   export DEBIAN_FRONTEND=noninteractive
   # Install common dependencies
   apt-get update
   apt-get --yes install --no-install-recommends \
      bison \
      build-essential\
      cmake \
      flex \
      git \
      gfortran \
      g++ \
      libblas-dev \
      libboost-date-time-dev \
      libboost-dev \
      libboost-filesystem-dev \
      libboost-numpy-dev \
      libboost-program-options-dev \
      libboost-python-dev \
      libboost-regex-dev \
      libboost-signals-dev \
      libboost-system-dev \
      libboost-test-dev \
      libboost-thread-dev \
      libcfitsio-dev \
      libfftw3-dev \
      libhdf5-serial-dev \
      liblapacke-dev \
      libncurses5-dev \
      libpython2.7-dev \
      libreadline-dev \
      python \
      python-numpy \
      python3-dev \
      python3-pip \
      python3-setuptools \
      wcslib-dev \
      wget
   pip3 install \
      dash \
      dash-bootstrap-components \
      numpy \
      astroquery \
      astropy \
      ipython \
      fpdf \
      ephem \
      matplotlib
   
   # Install casacore-data
   mkdir -p /opt/lofarsoft/data \
    && cd /opt/lofarsoft/data \
    && wget ftp://anonymous@ftp.astron.nl/outgoing/Measures/WSRT_Measures.ztar \
    && tar xvf WSRT_Measures.ztar \
    && rm WSRT_Measures.ztar
   
   # Install casacore
   wget https://github.com/casacore/casacore/archive/v3.1.2.tar.gz \
    && tar xvf v3.1.2.tar.gz && cd casacore-3.1.2 && mkdir build \
    && cd build \
    && cmake -DBUILD_PYTHON=True \
         -DDATA_DIR=/opt/lofarsoft/data \
         -DUSE_OPENMP=ON -DUSE_THREADS=OFF -DUSE_FFTW3=TRUE \
         -DUSE_HDF5=ON -DBUILD_PYTHON3=ON -DCMAKE_BUILD_TYPE=Release \
         -DCMAKE_INSTALL_PREFIX=/opt/lofarsoft/ \
         -DCMAKE_CXX_FLAGS="-fsigned-char -O2 -DNDEBUG -march=native" ../ \
    && make -j4 && make install \
    && cd ../../ && rm -rf casacore-3.1.2 v3.1.2.tar.gz
    
    # Install python casacore
    wget https://github.com/casacore/python-casacore/archive/v3.1.1.tar.gz \
     && tar xvf v3.1.1.tar.gz && cd python-casacore-3.1.1 \
     && python3 setup.py build_ext -I/opt/lofarsoft/include -L/opt/lofarsoft/lib/ \
     && mkdir -p /opt/lofarsoft/lib/python3.6/site-packages/ \
     && export PYTHONPATH=/opt/lofarsoft/lib/python3.6/site-packages/ \
     && python3 setup.py install --prefix=/opt/lofarsoft \
     && cd ../ && rm -r python-casacore-3.1.1 v3.1.1.tar.gz

%environment
    export PATH=${PATH}:/opt/lofarsoft/bin/
    export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/opt/lofarsoft/lib/
    export PYTHONPATH=/opt/lofarsoft/lib/python3.6/site-packages/ 
    
%help
    Singularity image containing all the dependencies needed to host LOFAR calculator.