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RHESSysWorkflow.py
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RHESSysWorkflow.py
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#!/usr/bin/python
import urllib, json, time
import wget
import sys
import os
import errno
import zipfile
import subprocess
import logging
import datetime
import argparse
###############################################################################################
## RHESSysWorkflow
##
## Version 0.1
##
## The purpose of this workflow is to setup and execute a RHESSys hydrological model
## using RHESSysWorkflows, HydroTerre and USGS web services.
##
## By Lorne Leonard
##
###############################################################################################
###############################################################################################
## ASSUMPTIONS
##
## Brian Miles' RHESSysWorkflows must be acessible to this python script.
##
###############################################################################################
###############################################################################################
## TODO LIST
##
## Add more options to control workflows
## Need better way to predict catchment area
## Need to validate user inputs
##
###############################################################################################
###############################################################################################
## KNOWN ISSUES
##
## Have observed RunModel.py not executing. Re-run works.
##
###############################################################################################
###############################################################################################
# Used for retaining workflow extent
#
class Extent(object):
min_x = 0
min_y = 0
max_x = 0
max_y = 0
def __init__(self, min_x, min_y, max_x, max_y):
self.min_x = min_x
self.min_y = min_y
self.max_x = max_x
self.max_y = max_y
def __repr__(self):
return "\nmin x = " + str(self.min_x) + "\nmin y = " + str(self.min_y) + "\nmax x = " + str(self.max_x) + "\nmax y = " + str(self.max_y) + "\n"
###############################################################################################
# Used for managing data, user options and file locations for executing RHESSysWorkflows
#
class RHESSysWorkflow(object):
######################################
## Important variables for catchment(s)
extent = Extent(0,0,0,0)
######################################
## Common variables for RHESSysWorkflow
project_location = '/tmp'
project_name = 'test'
output_folder_location = project_location + "/" + project_name
sub_project_folder = ''
gageid = '01589312'
publisher = 'Brian Miles <[email protected]>'
lai_fullpathname_with_ext = ''
climate_data_fullpathname =''
station_data_fullpathname = ''
dem_cell_threshold = 500
areaEstimate = 1.5
rhessys_source_location = ''
model_start_year = 2000
model_start_month = 1
model_start_day = 1
model_end_year = 2001
model_end_month = 1
model_end_day = 1
######################################
## Common variables for HydroTerre Workflows
ht_start_date = '2000-01-01'
ht_end_date = '2001-01-01'
huc_list_as_string = 'NONE'
huc_list_count = 0
huc_list = []
######################################
## Variables for this tool
start_time = datetime.datetime.now()
end_time = datetime.datetime.now()
timespan = end_time - start_time
logger = ''
hdlr = ''
###############################################################################################
def __init__(self, project_location, project_name, gageid, start_date, end_date, rhessys_source_location, publisher):
self.project_location = project_location
self.project_name = project_name
self.gageid = gageid
self.ht_start_date = start_date
self.ht_end_date = end_date
self.output_folder_location = self.project_location + "/" + self.project_name
self.sub_project_folder = self.output_folder_location + "/" + self.project_name
self.rhessys_source_location = rhessys_source_location
self.publisher = publisher
self.filter_times()
######################################
## Create project location
self.create_path(self.output_folder_location)
self.create_path(self.sub_project_folder)
self.setup_log()
######################################
## Create workflow
#print("Start Executing workflow")
self.execute_workflow()
#print("End Executing workflow")
###############################################################################################
### Common functions to manage workflow
def create_path(self, path):
try:
if not os.path.isdir(path):
os.makedirs(path)
except OSError as exception:
if exception.errno != errno.EEXIST or not os.path.isdir(path):
raise
def setup_log(self):
log_file = self.output_folder_location + "/" + self.project_name + ".log"
#print 'Log file location: ' + log_file
self.logger = logging.getLogger("myApp")
self.hdlr = logging.FileHandler(log_file)
self.logger.addHandler(self.hdlr)
self.logger.setLevel(logging.INFO)
def unzip_etv_zip_file_at_path(self, input_location, etv_output_folder_location):
try:
zfile = zipfile.ZipFile(input_location)
zfile.extractall(etv_output_folder_location)
zfile.close()
except Exception,e:
print str(e)
###############################################################################################
### Functions to retrieve properties from RHESSysWorkflow
def filter_times(self):
start_split = self.ht_start_date.split('-')
end_split = self.ht_end_date.split('-')
self.model_start_year = int(start_split[0])
self.model_start_month = int(start_split[1])
self.model_start_day = int(start_split[2])
self.model_end_year = int(end_split[0])
self.model_end_month = int(end_split[1])
self.model_end_day = int(end_split[2])
def get_Metadata_filename(self):
return self.project_location + "/" + self.project_name + "/" + self.project_name + "/metadata.txt"
def get_Extent_from_RHESSysWorkflows_Metadata_File(self):
try:
metadata_file_and_path = self.get_Metadata_filename()
self.logger.info(metadata_file_and_path)
extent_min_x = ''
extent_max_x = ''
extent_min_y = ''
extent_max_y = ''
f = open(metadata_file_and_path, 'r')
lines = f.readlines()
for line in lines:
#print line
fnd = line.find('bbox_wgs84 = ')
if fnd == 0:
#print line
split1 = line.split(' = ') #BEWARE OF SPACES
split2 = split1[1].replace('\n','').split(' ')
#print split2
extent_min_x = split2[0]
extent_min_y = split2[1]
extent_max_x = split2[2]
extent_max_y = split2[3]
result = Extent(extent_min_x,extent_min_y,extent_max_x,extent_max_y)
self.logger.info(result)
return result
except Exception,e:
self.logger.error(str(e))
return -1
###############################################################################################
### Functions to execute RHESSysWorkflow
def get_NHDStreamflowGageIdentifiersAndLocation(self, sub_project_folder, gageid):
try:
my_command = "GetNHDStreamflowGageIdentifiersAndLocation.py -p " + sub_project_folder + " -g " + gageid
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def get_CatchmentShapefileForNHDStreamflowGage(self, sub_project_folder):
try:
my_command = "GetCatchmentShapefileForNHDStreamflowGage.py --overwrite -p " + sub_project_folder
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def get_BoundingboxFromStudyareaShapefile(self, sub_project_folder):
try:
my_command = "GetBoundingboxFromStudyareaShapefile.py -p " + sub_project_folder
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except subprocess.CalledProcessError as e:
self.logger.error(str(e))
return -1
except Exception,e:
self.logger.error(str(e))
return -1
def get_USGSDEMForBoundingbox(self, sub_project_folder):
try:
my_command = "GetUSGSDEMForBoundingbox.py -p " + sub_project_folder
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def get_USGSNLCDForDEMExtent(self, sub_project_folder):
try:
my_command = "GetUSGSNLCDForDEMExtent.py -p " + sub_project_folder
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def get_SSURGOFeaturesForBoundingbox(self, sub_project_folder):
try:
my_command = "GetSSURGOFeaturesForBoundingbox.py -p " + sub_project_folder
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def GenerateSoilPropertyRastersFromSSURGO(self, sub_project_folder):
try:
my_command = "GenerateSoilPropertyRastersFromSSURGO.py -p " + sub_project_folder
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def Register_LAI_Raster(self, sub_project_folder, lai_fullpathname_with_ext, publisher):
try:
my_command = "RegisterRaster.py -p " + sub_project_folder + " -t lai -r " + lai_fullpathname_with_ext + " -b \"" + publisher + "\" --force "
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def CreateGRASSLocationFromDEM(self, sub_project_folder, description):
try:
my_command = "CreateGRASSLocationFromDEM.py -p " + sub_project_folder + " -d " + description
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def ImportRHESSysSource(self, sub_project_folder, source_code_location):
try:
my_command = "ImportRHESSysSource.py -p " + sub_project_folder + " -s " + source_code_location
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def ImportClimateData(self, sub_project_folder, climate_data_location):
try:
my_command = "ImportClimateData.py -p " + sub_project_folder + " -s " + climate_data_location
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def GenerateBaseStationMap(self, sub_project_folder, station_data_location):
try:
my_command = "GenerateBaseStationMap.py -p " + sub_project_folder + " -b " + station_data_location
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
##TODO OTHER VARIABLES
def DelineateWatershed(self, sub_project_folder, dem_cell_threshold, areaEstimate):
try:
my_command = "DelineateWatershed.py -p " + sub_project_folder + " -t " + str(dem_cell_threshold) + " -a " + str(areaEstimate)
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
##TODO OTHER VARIABLES
def GeneratePatchMap(self, sub_project_folder):
try:
my_command = "GeneratePatchMap.py -p " + sub_project_folder + " -t clump -c elevation"
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def GenerateSoilTextureMap(self, sub_project_folder):
try:
my_command = "GenerateSoilTextureMap.py -p " + sub_project_folder
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def ImportRasterMapIntoGRASS_LAI(self, sub_project_folder):
try:
my_command = "ImportRasterMapIntoGRASS.py -p " + sub_project_folder + " -t lai -m nearest"
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def ImportRasterMapIntoGRASS_LANDCOVER(self, sub_project_folder):
try:
my_command = "ImportRasterMapIntoGRASS.py -p " + sub_project_folder + " -t landcover -m nearest"
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def RegisterLandcoverReclassRules(self, sub_project_folder):
try:
my_command = "RegisterLandcoverReclassRules.py -p " + sub_project_folder + " -k"
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def GenerateLandcoverMaps(self, sub_project_folder):
try:
my_command = "GenerateLandcoverMaps.py -p " + sub_project_folder
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
#TODO NAME OF CLIMATE STATION
def GenerateWorldTemplate(self, sub_project_folder):
try:
my_command = "GenerateWorldTemplate.py -p " + sub_project_folder + " -c HT_RHESSys"
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def CreateWorldfile(self, sub_project_folder):
try:
my_command = "CreateWorldfile.py -p " + sub_project_folder + " -v"
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def CreateFlowtable(self, sub_project_folder):
try:
my_command = "CreateFlowtable.py -p " + sub_project_folder + " --routeRoads"
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def RunLAIRead(self, sub_project_folder):
try:
my_command = "RunLAIRead.py -p " + sub_project_folder + " -v"
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
##TODO MORE OPTIONS
def RunCmd(self, sub_project_folder, addmonths):
try:
output_location = sub_project_folder + "/rhessys/tecfiles/tec_daily.txt"
my_command = "RunCmd.py -p " + sub_project_folder + ' echo \"' + str(self.model_start_year) + ' ' + str(self.model_start_month + addmonths) + ' ' + str(self.model_start_day) + ' 1 print_daily_on\" > ' + output_location
#my_command = "RunCmd.py -p " + sub_project_folder + ' echo "2008 10 1 1 print_daily_on" > ' + output_location
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
##TODO MORE OPTIONS
def RunModel(self, sub_project_folder):
try:
model_start = str(self.model_start_year) + ' ' + str(self.model_start_month) + ' ' + str(self.model_start_day) + ' 1'
model_end = str(self.model_end_year) + ' ' + str(self.model_start_month) + ' ' + str(self.model_end_day) + ' 1'
my_command = "RunModel.py -v -p " + sub_project_folder + ' -d "Test model run" --basin -pre test -st ' + model_start + ' -ed ' + model_end + ' -w world -t tec_daily.txt -r world.flow -- -s 0.07041256017 133.552915269 1.81282283058 -sv 4.12459677088 78.3440566535 -gw 0.00736592779294 0.340346799457'
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT)
return output
except Exception,e:
self.logger.error(str(e))
return -1
def RHESSysPlot(self, sub_project_folder, obs_data):
try:
data = sub_project_folder + '/rhessys/output/test/rhessys_basin.daily'
my_command = "RHESSysPlot.py --plottype standard -o " + obs_data + " -d " + data + " -c streamflow --secondaryData " + data + ' --secondaryColumn precip --secondaryLabel "Rainfall (mm/day)" -t "DR5 streamflow" -l "Test simulation" -f test_plot --figureX 8 --figureY 3 -y "Streamflow (mm/day)" --color magenta'
self.logger.info(my_command)
output = subprocess.check_output(my_command, shell=True, stderr=subprocess.STDOUT, cwd=sub_project_folder)
return output
except Exception,e:
self.logger.error(str(e))
return -1
###############################################################################################
### Functions to execute HydroTerre Workflows
def set_huc12_list(self, huc_list_as_string):
try:
self.huc_list = huc_list_as_string.split(';')
self.huc_list_count = len(self.huc_list)
except Exception,e:
self.logger.error(str(e))
return -1
def get_HUC12_IDs_from_RhyessSys_Domain(self, extent):
try:
XMin = extent.min_x
YMin = extent.min_y
XMax = extent.max_x
YMax = extent.max_y
huc_list_result = ""
check_interval=30
taskUrl = "http://hydroterre.psu.edu:6080/arcgis/rest/services/RHESSys/getHUC12sfromRHESSysWorkflows/GPServer/get_HUC12_IDs_from_Extent"
###############################################################################################
# Call HydroTerre Service
data = {'XMin': XMin,
'YMin' : YMin,
'XMax' : XMax,
'YMax' : YMax,
'f': 'pjson'}
submitUrl = taskUrl + "/submitJob"
submitResponse = urllib.urlopen(submitUrl, urllib.urlencode(data))
submitJson = json.loads(submitResponse.read())
###############################################################################################
# Check for HydroTerre Service results
if 'jobId' in submitJson:
jobID = submitJson['jobId']
status = submitJson['jobStatus']
jobUrl = taskUrl + "/jobs/" + jobID
while status == "esriJobSubmitted" or status == "esriJobExecuting":
print "checking to see if HydroTerre job is completed..."
time.sleep(check_interval)
jobResponse = urllib.urlopen(jobUrl, "f=json")
jobJson = json.loads(jobResponse.read())
if 'jobStatus' in jobJson:
status = jobJson['jobStatus']
if status == "esriJobSucceeded":
if 'results' in jobJson:
resultsUrl = jobUrl + "/results/"
resultsJson = jobJson['results']
for paramName in resultsJson.keys():
#print paramName
resultUrl = resultsUrl + paramName
resultResponse = urllib.urlopen(resultUrl, "f=json")
resultJson = json.loads(resultResponse.read())
#print resultJson['value']
if paramName == 'Result_HUC12_List':
huc_list_result = resultJson['value']
#print resultsJson['Result_HUC12_List']
#print jobJson
if status == "esriJobFailed":
if 'messages' in jobJson:
self.logger.error(jobJson['messages'])
self.logger.error('HydroTerre job failed get_HUC12_IDs_from_RhyessSys_Domain')
sys.exit(-100)
else:
self.logger.error("no HydroTerre jobId found in the response get_HUC12_IDs_from_RhyessSys_Domain")
sys.exit(-101)
except Exception,e:
self.logger.error( str(e) )
self.set_huc12_list(huc_list_result)
self.logger.info(huc_list_result)
return huc_list_result
def HydroTerre_RHESSys_ByExtent(self, extent, ht_start_date, ht_end_date, output_folder_location):
try:
url_result = ""
check_interval=30
XMin = extent.min_x
YMin = extent.min_y
XMax = extent.max_x
YMax = extent.max_y
#TODO
#XMin = '1636304.118'
#YMin = '1963764.027'
#XMax = '1637809.723'
#YMax = '1964829.119'
###############################################################################################
# Call HydroTerre Service
data = {'XMin': XMin,
'YMin': YMin,
'XMax': XMax,
'YMax': YMax,
'Start_Date' : ht_start_date,
'End_Date' : ht_end_date,
'f': 'pjson'}
taskUrl = "http://hydroterre.psu.edu:6080/arcgis/rest/services/RHESSys/HydroTerre_RHESSys_ByExtent/GPServer/HydroTerre_Rhessys_By_Extent"
submitUrl = taskUrl + "/submitJob"
submitResponse = urllib.urlopen(submitUrl, urllib.urlencode(data))
submitJson = json.loads(submitResponse.read())
###############################################################################################
# Check for HydroTerre Service results
if 'jobId' in submitJson:
jobID = submitJson['jobId']
status = submitJson['jobStatus']
jobUrl = taskUrl + "/jobs/" + jobID
while status == "esriJobSubmitted" or status == "esriJobExecuting":
#print "checking to see if HydroTerre job is completed..."
time.sleep(check_interval)
jobResponse = urllib.urlopen(jobUrl, "f=json")
jobJson = json.loads(jobResponse.read())
if 'jobStatus' in jobJson:
status = jobJson['jobStatus']
if status == "esriJobSucceeded":
if 'results' in jobJson:
resultsUrl = jobUrl + "/results/"
resultsJson = jobJson['results']
for paramName in resultsJson.keys():
#print paramName
resultUrl = resultsUrl + paramName
resultResponse = urllib.urlopen(resultUrl, "f=json")
resultJson = json.loads(resultResponse.read())
if paramName == 'Result_URL':
url_result = resultJson['value']
if paramName == 'HUC12_AREAS':
huc12areas = resultJson['value']
#print jobJson
if status == "esriJobFailed":
if 'messages' in jobJson:
print jobJson['messages']
print 'HydroTerre job failed'
sys.exit(-100)
else:
print "no HydroTerre jobId found in the response"
sys.exit(-101)
###############################################################################################
# Get HydroTerre Service Data Bundle
#print '--------Download Start-------------'
#print 'Retrieving result from: '+ url_result
wget.download(url_result, out=output_folder_location)
#print '--------Download End-------------'
###############################################################################################
#print '--------Unzip Start-------------'
zipfolder = output_folder_location + '/RHESSys_ETV'
self.create_path(zipfolder)
zipfilepathname = output_folder_location + '/RHESSys_ETV_Data.zip'
self.unzip_etv_zip_file_at_path(zipfilepathname, zipfolder)
#print '--------Unzip End-------------'
###############################################################################################
#print '--------HUC12 Area-------------'
#print huc12areas + ' SQKM'
self.areaEstimate = huc12areas
except Exception,e:
print str(e)
return
###############################################################################################
# Print iterations progress
def printProgress (self, iteration, total, prefix = '', suffix = '', decimals = 1, barLength = 100):
"""
Call in a loop to create terminal progress bar
@params:
iteration - Required : current iteration (Int)
total - Required : total iterations (Int)
prefix - Optional : prefix string (Str)
suffix - Optional : suffix string (Str)
decimals - Optional : positive number of decimals in percent complete (Int)
barLength - Optional : character length of bar (Int)
"""
formatStr = "{0:." + str(decimals) + "f}"
percents = formatStr.format(100 * (iteration / float(total)))
filledLength = int(round(barLength * iteration / float(total)))
bar = '*' * filledLength + '-' * (barLength - filledLength)
sys.stdout.write('\r%s |%s| %s%s %s' % (prefix, bar, percents, '%', suffix)),
sys.stdout.flush()
if iteration == total:
sys.stdout.write('\n')
sys.stdout.flush()
###############################################################################################
### EXECUTE
def execute_workflow(self):
try:
# make a list
items = list(range(0, 30))
i = 0
l = len(items)
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.start_time = datetime.datetime.now()
self.logger.info(self.start_time)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("get_NHDStreamflowGageIdentifiersAndLocation")
output = self.get_NHDStreamflowGageIdentifiersAndLocation(self.sub_project_folder,self.gageid)
if output == -1:
sys.exit(-1001)
self.logger.info(output)
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("get_CatchmentShapefileForNHDStreamflowGage")
output = self.get_CatchmentShapefileForNHDStreamflowGage(self.sub_project_folder)
if output == -1:
sys.exit(-1002)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("get_BoundingboxFromStudyareaShapefile")
output = self.get_BoundingboxFromStudyareaShapefile(self.sub_project_folder)
if output == -1:
sys.exit(-1003)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
## Now can get extent
self.logger.info("get_Extent_from_RHESSysWorkflows_Metadata_File")
self.extent = self.get_Extent_from_RHESSysWorkflows_Metadata_File()
if self.extent == -1:
sys.exit(-1004)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
## Now get huc12 list count (threshold too big?)
##self.logger.info("get_Extent_from_RHESSysWorkflows_Metadata_File")
##self.huc_list_as_string = self.get_HUC12_IDs_from_RhyessSys_Domain(self.extent)
##self.logger.info("huc_list = " + huc_list_as_string)
##TODO Add GSSURGO back to HT workflow
## Get Data Bundle (will need to have internal threshold check for now)
self.logger.info("get_Extent_from_RHESSysWorkflows_Metadata_File")
output = self.HydroTerre_RHESSys_ByExtent(self.extent, self.ht_start_date, self.ht_end_date, self.sub_project_folder)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
#print '--------Unzip Start-------------'
zipfolder = self.sub_project_folder + '/RHESSys_ETV'
self.create_path(zipfolder)
zipfilepathname = self.sub_project_folder + '/RHESSys_ETV_Data.zip'
self.unzip_etv_zip_file_at_path(zipfilepathname, zipfolder)
#print '--------Unzip End-------------'
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
##TODO ERROR MESSAGE -> NEED TO RETURN MEANINGFUL MESSAGES FROM SERVICE. i.e. return message when too many huc12s
self.logger.info("get_USGSDEMForBoundingbox")
output = self.get_USGSDEMForBoundingbox(self.sub_project_folder)
if output == -1:
sys.exit(-1005)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("get_USGSNLCDForDEMExtent")
output = self.get_USGSNLCDForDEMExtent(self.sub_project_folder)
if output == -1:
sys.exit(-1006)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("get_SSURGOFeaturesForBoundingbox")
output = self.get_SSURGOFeaturesForBoundingbox(self.sub_project_folder)
if output == -1:
sys.exit(-1007)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("GenerateSoilPropertyRastersFromSSURGO")
output = self.GenerateSoilPropertyRastersFromSSURGO(self.sub_project_folder)
if output == -1:
sys.exit(-1008)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
#TODO
#self.lai_fullpathname_with_ext = "/projects/start_from_scratch/01589312/static_lai-01589312.tif"
#How do I handle array of LAI rasters for workflow?
#Resampling lai raster from EPSG:4269 to EPSG:32618, spatial resolution
self.logger.info("Register_LAI_Raster")
self.lai_fullpathname_with_ext = self.sub_project_folder + '/RHESSys_ETV/RHESSys_LAI/LAI_Month0.tif'
output = self.Register_LAI_Raster(self.sub_project_folder, self.lai_fullpathname_with_ext, self.publisher)
if output == -1:
sys.exit(-1009)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("CreateGRASSLocationFromDEM")
#Beware of quotes
output = self.CreateGRASSLocationFromDEM(self.sub_project_folder, '"RHESSys model for Dead Run 5 watershed near Catonsville, MD"')
if output == -1:
sys.exit(-1010)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
#TODO CHECK SOURCE PATH IS VALID
self.logger.info("ImportRHESSysSource")
output = self.ImportRHESSysSource(self.sub_project_folder, self.rhessys_source_location)
if output == -1:
sys.exit(-1011)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
##NOTE ASSUMPTION ABOUT PATH
self.climate_data_fullpathname = self.sub_project_folder + '/RHESSys_ETV/RHESSys_Climate'
#PROBLEM HERE
self.logger.info("ImportClimateData")
output = self.ImportClimateData(self.sub_project_folder, self.climate_data_fullpathname)
if output == -1:
sys.exit(-1012)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
##NOTE ASSUMPTION ABOUT PATH
self.station_data_fullpathname = self.sub_project_folder + '/RHESSys_ETV/RHESSys_Climate'
##TODO Does USGS provide CONUS location of climate stations we can use?
##TODO Do we need this function to continue?
#self.logger.info("GenerateBaseStationMap")
#output = self.GenerateBaseStationMap(self.sub_project_folder, self.station_data_fullpathname)
#if output == -1:
# sys.exit(-1013)
#self.logger.info(output)
#TODO OTHER METHODS TO ESTIMATE AREA (i.e from huc12s).
#POOR self.areaEstimate = self.extent.area
self.logger.info("DelineateWatershed")
output = self.DelineateWatershed(self.sub_project_folder, self.dem_cell_threshold, self.areaEstimate)
if output == -1:
sys.exit(-1014)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
##TODO Other Options
self.logger.info("GeneratePatchMap")
output = self.GeneratePatchMap(self.sub_project_folder)
if output == -1:
sys.exit(-1015)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("GenerateSoilTextureMap")
output = self.GenerateSoilTextureMap(self.sub_project_folder)
if output == -1:
sys.exit(-1016)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("ImportRasterMapIntoGRASS_LAI")
output = self.ImportRasterMapIntoGRASS_LAI(self.sub_project_folder)
if output == -1:
sys.exit(-1017)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("ImportRasterMapIntoGRASS_LANDCOVER")
output = self.ImportRasterMapIntoGRASS_LANDCOVER(self.sub_project_folder)
#if output == -1:
# sys.exit(-1018)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("ImportRasterMapIntoGRASS_LANDCOVER")
output = self.ImportRasterMapIntoGRASS_LANDCOVER(self.sub_project_folder)
#if output == -1:
# sys.exit(-1019)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("RegisterLandcoverReclassRules")
output = self.RegisterLandcoverReclassRules(self.sub_project_folder)
if output == -1:
sys.exit(-1020)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
self.logger.info("GenerateLandcoverMaps")
output = self.GenerateLandcoverMaps(self.sub_project_folder)
if output == -1:
sys.exit(-1021)
self.logger.info(output)
i += 1
self.printProgress(i, l, prefix = 'Progress:', suffix = 'Complete', barLength = 50)
#TODO VARIABLE NAMES
self.logger.info("GenerateWorldTemplate")
output = self.GenerateWorldTemplate(self.sub_project_folder)
if output == -1:
sys.exit(-1022)
self.logger.info(output)
i += 1